Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2303 and SMa2305 are separated by 177 nucleotides SMa2305 and SMa2307 are separated by 77 nucleotides SMa2307 and SMa2309 overlap by 25 nucleotides
SMa2303: SMa2303 - ROK family transcriptional regulator, at 1,283,423 to 1,284,649
SMa2303
SMa2305: SMa2305 - ABC transporter substrate-binding protein, at 1,284,827 to 1,286,095
SMa2305
SMa2307: SMa2307 - ABC transporter permease, at 1,286,173 to 1,287,096
SMa2307
SMa2309: SMa2309 - ABC transporter permease, at 1,287,072 to 1,287,893
SMa2309
Position (kb)
1284
1285
1286
1287 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1283.857 kb on + strand, within SMa2303 at 1283.857 kb on + strand, within SMa2303 at 1283.857 kb on + strand, within SMa2303 at 1283.858 kb on - strand, within SMa2303 at 1283.911 kb on + strand, within SMa2303 at 1283.912 kb on - strand, within SMa2303 at 1283.936 kb on + strand, within SMa2303 at 1283.937 kb on - strand, within SMa2303 at 1283.973 kb on + strand, within SMa2303 at 1283.974 kb on - strand at 1283.974 kb on - strand, within SMa2303 at 1283.974 kb on - strand, within SMa2303 at 1283.974 kb on - strand, within SMa2303 at 1283.974 kb on - strand, within SMa2303 at 1284.080 kb on + strand, within SMa2303 at 1284.080 kb on + strand, within SMa2303 at 1284.081 kb on - strand, within SMa2303 at 1284.097 kb on - strand at 1284.148 kb on + strand, within SMa2303 at 1284.149 kb on - strand, within SMa2303 at 1284.149 kb on - strand, within SMa2303 at 1284.293 kb on + strand, within SMa2303 at 1284.294 kb on - strand, within SMa2303 at 1284.306 kb on - strand, within SMa2303 at 1284.306 kb on - strand, within SMa2303 at 1284.541 kb on + strand at 1284.644 kb on - strand at 1284.649 kb on + strand at 1284.649 kb on + strand at 1284.708 kb on + strand at 1284.821 kb on + strand at 1284.821 kb on + strand at 1284.866 kb on - strand at 1285.048 kb on + strand, within SMa2305 at 1285.199 kb on + strand, within SMa2305 at 1285.199 kb on + strand, within SMa2305 at 1285.254 kb on - strand, within SMa2305 at 1285.292 kb on + strand, within SMa2305 at 1285.456 kb on + strand, within SMa2305 at 1285.456 kb on + strand, within SMa2305 at 1285.456 kb on + strand, within SMa2305 at 1285.505 kb on + strand, within SMa2305 at 1285.582 kb on + strand, within SMa2305 at 1285.582 kb on + strand, within SMa2305 at 1285.582 kb on + strand, within SMa2305 at 1285.696 kb on + strand, within SMa2305 at 1285.697 kb on - strand, within SMa2305 at 1285.764 kb on + strand, within SMa2305 at 1285.764 kb on + strand, within SMa2305 at 1285.765 kb on - strand, within SMa2305 at 1286.108 kb on + strand at 1286.108 kb on + strand at 1286.109 kb on - strand at 1286.109 kb on - strand at 1286.129 kb on - strand at 1286.357 kb on + strand, within SMa2307 at 1286.386 kb on - strand, within SMa2307 at 1286.450 kb on + strand, within SMa2307 at 1286.489 kb on + strand, within SMa2307 at 1286.530 kb on - strand, within SMa2307 at 1286.539 kb on + strand, within SMa2307 at 1286.558 kb on + strand, within SMa2307 at 1286.683 kb on + strand, within SMa2307 at 1286.684 kb on - strand, within SMa2307 at 1286.705 kb on + strand, within SMa2307 at 1286.705 kb on + strand, within SMa2307 at 1286.706 kb on - strand, within SMa2307 at 1286.706 kb on - strand, within SMa2307 at 1286.902 kb on + strand, within SMa2307 at 1286.903 kb on - strand, within SMa2307 at 1287.043 kb on + strand at 1287.043 kb on + strand at 1287.043 kb on + strand at 1287.043 kb on + strand at 1287.090 kb on + strand at 1287.091 kb on - strand at 1287.091 kb on - strand at 1287.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 1,283,857 + SMa2303 0.35 +8.2 1,283,857 + SMa2303 0.35 +8.1 1,283,857 + SMa2303 0.35 +8.3 1,283,858 - SMa2303 0.35 +8.5 1,283,911 + SMa2303 0.40 +8.6 1,283,912 - SMa2303 0.40 +8.5 1,283,936 + SMa2303 0.42 +8.5 1,283,937 - SMa2303 0.42 +8.5 1,283,973 + SMa2303 0.45 +8.6 1,283,974 - +7.9 1,283,974 - SMa2303 0.45 +8.4 1,283,974 - SMa2303 0.45 +8.2 1,283,974 - SMa2303 0.45 +8.9 1,283,974 - SMa2303 0.45 +8.2 1,284,080 + SMa2303 0.54 +8.4 1,284,080 + SMa2303 0.54 +8.6 1,284,081 - SMa2303 0.54 +8.2 1,284,097 - +9.2 1,284,148 + SMa2303 0.59 +8.3 1,284,149 - SMa2303 0.59 +8.2 1,284,149 - SMa2303 0.59 +8.6 1,284,293 + SMa2303 0.71 +8.5 1,284,294 - SMa2303 0.71 +8.5 1,284,306 - SMa2303 0.72 +8.3 1,284,306 - SMa2303 0.72 +8.6 1,284,541 + +8.0 1,284,644 - -1.5 1,284,649 + +5.2 1,284,649 + +6.1 1,284,708 + +5.3 1,284,821 + +1.9 1,284,821 + +0.6 1,284,866 - -0.4 1,285,048 + SMa2305 0.17 +2.0 1,285,199 + SMa2305 0.29 -0.3 1,285,199 + SMa2305 0.29 -0.3 1,285,254 - SMa2305 0.34 -0.9 1,285,292 + SMa2305 0.37 -0.2 1,285,456 + SMa2305 0.50 +1.1 1,285,456 + SMa2305 0.50 +1.0 1,285,456 + SMa2305 0.50 +1.3 1,285,505 + SMa2305 0.53 +2.0 1,285,582 + SMa2305 0.59 +1.7 1,285,582 + SMa2305 0.59 +1.3 1,285,582 + SMa2305 0.59 +2.8 1,285,696 + SMa2305 0.68 +2.7 1,285,697 - SMa2305 0.69 +1.0 1,285,764 + SMa2305 0.74 +4.0 1,285,764 + SMa2305 0.74 +3.1 1,285,765 - SMa2305 0.74 -1.7 1,286,108 + +7.3 1,286,108 + +7.5 1,286,109 - -0.4 1,286,109 - +0.3 1,286,129 - -0.7 1,286,357 + SMa2307 0.20 +6.1 1,286,386 - SMa2307 0.23 -0.7 1,286,450 + SMa2307 0.30 +5.5 1,286,489 + SMa2307 0.34 +7.0 1,286,530 - SMa2307 0.39 -1.9 1,286,539 + SMa2307 0.40 +5.4 1,286,558 + SMa2307 0.42 +8.2 1,286,683 + SMa2307 0.55 +6.8 1,286,684 - SMa2307 0.55 +0.0 1,286,705 + SMa2307 0.58 +4.6 1,286,705 + SMa2307 0.58 +2.9 1,286,706 - SMa2307 0.58 -0.6 1,286,706 - SMa2307 0.58 +0.0 1,286,902 + SMa2307 0.79 +7.1 1,286,903 - SMa2307 0.79 +1.4 1,287,043 + +3.3 1,287,043 + +2.2 1,287,043 + +3.3 1,287,043 + +5.6 1,287,090 + +3.3 1,287,091 - +0.2 1,287,091 - -0.1 1,287,091 - -0.2
Or see this region's nucleotide sequence