Strain Fitness in Sinorhizobium meliloti 1021 around SMa2305

Experiment: Lactitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa2303 and SMa2305 are separated by 177 nucleotidesSMa2305 and SMa2307 are separated by 77 nucleotidesSMa2307 and SMa2309 overlap by 25 nucleotides SMa2303: SMa2303 - ROK family transcriptional regulator, at 1,283,423 to 1,284,649 SMa2303 SMa2305: SMa2305 - ABC transporter substrate-binding protein, at 1,284,827 to 1,286,095 SMa2305 SMa2307: SMa2307 - ABC transporter permease, at 1,286,173 to 1,287,096 SMa2307 SMa2309: SMa2309 - ABC transporter permease, at 1,287,072 to 1,287,893 SMa2309 Position (kb) 1284 1285 1286 1287Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 1283.857 kb on + strand, within SMa2303at 1283.857 kb on + strand, within SMa2303at 1283.857 kb on + strand, within SMa2303at 1283.858 kb on - strand, within SMa2303at 1283.911 kb on + strand, within SMa2303at 1283.912 kb on - strand, within SMa2303at 1283.936 kb on + strand, within SMa2303at 1283.937 kb on - strand, within SMa2303at 1283.973 kb on + strand, within SMa2303at 1283.974 kb on - strandat 1283.974 kb on - strand, within SMa2303at 1283.974 kb on - strand, within SMa2303at 1283.974 kb on - strand, within SMa2303at 1283.974 kb on - strand, within SMa2303at 1284.080 kb on + strand, within SMa2303at 1284.080 kb on + strand, within SMa2303at 1284.081 kb on - strand, within SMa2303at 1284.097 kb on - strandat 1284.148 kb on + strand, within SMa2303at 1284.149 kb on - strand, within SMa2303at 1284.149 kb on - strand, within SMa2303at 1284.293 kb on + strand, within SMa2303at 1284.294 kb on - strand, within SMa2303at 1284.306 kb on - strand, within SMa2303at 1284.306 kb on - strand, within SMa2303at 1284.541 kb on + strandat 1284.644 kb on - strandat 1284.649 kb on + strandat 1284.649 kb on + strandat 1284.708 kb on + strandat 1284.821 kb on + strandat 1284.821 kb on + strandat 1284.866 kb on - strandat 1285.048 kb on + strand, within SMa2305at 1285.199 kb on + strand, within SMa2305at 1285.199 kb on + strand, within SMa2305at 1285.254 kb on - strand, within SMa2305at 1285.292 kb on + strand, within SMa2305at 1285.456 kb on + strand, within SMa2305at 1285.456 kb on + strand, within SMa2305at 1285.456 kb on + strand, within SMa2305at 1285.505 kb on + strand, within SMa2305at 1285.582 kb on + strand, within SMa2305at 1285.582 kb on + strand, within SMa2305at 1285.582 kb on + strand, within SMa2305at 1285.696 kb on + strand, within SMa2305at 1285.697 kb on - strand, within SMa2305at 1285.764 kb on + strand, within SMa2305at 1285.764 kb on + strand, within SMa2305at 1285.765 kb on - strand, within SMa2305at 1286.108 kb on + strandat 1286.108 kb on + strandat 1286.109 kb on - strandat 1286.109 kb on - strandat 1286.129 kb on - strandat 1286.357 kb on + strand, within SMa2307at 1286.386 kb on - strand, within SMa2307at 1286.450 kb on + strand, within SMa2307at 1286.489 kb on + strand, within SMa2307at 1286.530 kb on - strand, within SMa2307at 1286.539 kb on + strand, within SMa2307at 1286.558 kb on + strand, within SMa2307at 1286.683 kb on + strand, within SMa2307at 1286.684 kb on - strand, within SMa2307at 1286.705 kb on + strand, within SMa2307at 1286.705 kb on + strand, within SMa2307at 1286.706 kb on - strand, within SMa2307at 1286.706 kb on - strand, within SMa2307at 1286.902 kb on + strand, within SMa2307at 1286.903 kb on - strand, within SMa2307at 1287.043 kb on + strandat 1287.043 kb on + strandat 1287.043 kb on + strandat 1287.043 kb on + strandat 1287.090 kb on + strandat 1287.091 kb on - strandat 1287.091 kb on - strandat 1287.091 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
remove
1,283,857 + SMa2303 0.35 +8.2
1,283,857 + SMa2303 0.35 +8.1
1,283,857 + SMa2303 0.35 +8.3
1,283,858 - SMa2303 0.35 +8.5
1,283,911 + SMa2303 0.40 +8.6
1,283,912 - SMa2303 0.40 +8.5
1,283,936 + SMa2303 0.42 +8.5
1,283,937 - SMa2303 0.42 +8.5
1,283,973 + SMa2303 0.45 +8.6
1,283,974 - +7.9
1,283,974 - SMa2303 0.45 +8.4
1,283,974 - SMa2303 0.45 +8.2
1,283,974 - SMa2303 0.45 +8.9
1,283,974 - SMa2303 0.45 +8.2
1,284,080 + SMa2303 0.54 +8.4
1,284,080 + SMa2303 0.54 +8.6
1,284,081 - SMa2303 0.54 +8.2
1,284,097 - +9.2
1,284,148 + SMa2303 0.59 +8.3
1,284,149 - SMa2303 0.59 +8.2
1,284,149 - SMa2303 0.59 +8.6
1,284,293 + SMa2303 0.71 +8.5
1,284,294 - SMa2303 0.71 +8.5
1,284,306 - SMa2303 0.72 +8.3
1,284,306 - SMa2303 0.72 +8.6
1,284,541 + +8.0
1,284,644 - -1.5
1,284,649 + +5.2
1,284,649 + +6.1
1,284,708 + +5.3
1,284,821 + +1.9
1,284,821 + +0.6
1,284,866 - -0.4
1,285,048 + SMa2305 0.17 +2.0
1,285,199 + SMa2305 0.29 -0.3
1,285,199 + SMa2305 0.29 -0.3
1,285,254 - SMa2305 0.34 -0.9
1,285,292 + SMa2305 0.37 -0.2
1,285,456 + SMa2305 0.50 +1.1
1,285,456 + SMa2305 0.50 +1.0
1,285,456 + SMa2305 0.50 +1.3
1,285,505 + SMa2305 0.53 +2.0
1,285,582 + SMa2305 0.59 +1.7
1,285,582 + SMa2305 0.59 +1.3
1,285,582 + SMa2305 0.59 +2.8
1,285,696 + SMa2305 0.68 +2.7
1,285,697 - SMa2305 0.69 +1.0
1,285,764 + SMa2305 0.74 +4.0
1,285,764 + SMa2305 0.74 +3.1
1,285,765 - SMa2305 0.74 -1.7
1,286,108 + +7.3
1,286,108 + +7.5
1,286,109 - -0.4
1,286,109 - +0.3
1,286,129 - -0.7
1,286,357 + SMa2307 0.20 +6.1
1,286,386 - SMa2307 0.23 -0.7
1,286,450 + SMa2307 0.30 +5.5
1,286,489 + SMa2307 0.34 +7.0
1,286,530 - SMa2307 0.39 -1.9
1,286,539 + SMa2307 0.40 +5.4
1,286,558 + SMa2307 0.42 +8.2
1,286,683 + SMa2307 0.55 +6.8
1,286,684 - SMa2307 0.55 +0.0
1,286,705 + SMa2307 0.58 +4.6
1,286,705 + SMa2307 0.58 +2.9
1,286,706 - SMa2307 0.58 -0.6
1,286,706 - SMa2307 0.58 +0.0
1,286,902 + SMa2307 0.79 +7.1
1,286,903 - SMa2307 0.79 +1.4
1,287,043 + +3.3
1,287,043 + +2.2
1,287,043 + +3.3
1,287,043 + +5.6
1,287,090 + +3.3
1,287,091 - +0.2
1,287,091 - -0.1
1,287,091 - -0.2

Or see this region's nucleotide sequence