Strain Fitness in Sinorhizobium meliloti 1021 around SMa2079

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2077 and SMa2079 are separated by 14 nucleotidesSMa2079 and SMa2081 overlap by 23 nucleotidesSMa2081 and SMa2083 are separated by 2 nucleotides SMa2077: SMa2077 - oxidoreductase, at 1,173,082 to 1,174,143 SMa2077 SMa2079: SMa2079 - ABC transporter ATP-binding protein, at 1,174,158 to 1,175,102 SMa2079 SMa2081: SMa2081 - ABC transporter ATP-binding protein, at 1,175,080 to 1,176,078 SMa2081 SMa2083: SMa2083 - ABC transporter permease, at 1,176,081 to 1,177,079 SMa2083 Position (kb) 1174 1175 1176Strain fitness (log2 ratio) -1 0 1 2at 1173.270 kb on - strand, within SMa2077at 1173.270 kb on - strand, within SMa2077at 1173.497 kb on + strand, within SMa2077at 1173.498 kb on - strand, within SMa2077at 1173.498 kb on - strand, within SMa2077at 1173.498 kb on - strand, within SMa2077at 1173.532 kb on - strand, within SMa2077at 1173.533 kb on + strand, within SMa2077at 1173.534 kb on - strand, within SMa2077at 1173.555 kb on - strand, within SMa2077at 1173.608 kb on + strand, within SMa2077at 1173.609 kb on - strand, within SMa2077at 1173.609 kb on - strand, within SMa2077at 1173.609 kb on - strand, within SMa2077at 1173.791 kb on + strand, within SMa2077at 1173.805 kb on - strand, within SMa2077at 1173.805 kb on - strand, within SMa2077at 1173.806 kb on + strand, within SMa2077at 1173.806 kb on + strand, within SMa2077at 1173.807 kb on - strand, within SMa2077at 1173.807 kb on - strand, within SMa2077at 1173.807 kb on - strand, within SMa2077at 1173.807 kb on - strand, within SMa2077at 1173.849 kb on - strand, within SMa2077at 1173.849 kb on - strand, within SMa2077at 1173.983 kb on + strand, within SMa2077at 1173.983 kb on + strand, within SMa2077at 1174.039 kb on - strandat 1174.127 kb on + strandat 1174.365 kb on + strand, within SMa2079at 1174.376 kb on + strand, within SMa2079at 1174.378 kb on + strand, within SMa2079at 1174.379 kb on - strand, within SMa2079at 1174.442 kb on - strand, within SMa2079at 1174.442 kb on - strand, within SMa2079at 1174.442 kb on - strand, within SMa2079at 1174.469 kb on - strand, within SMa2079at 1174.504 kb on + strand, within SMa2079at 1174.733 kb on + strand, within SMa2079at 1174.811 kb on + strand, within SMa2079at 1175.340 kb on + strand, within SMa2081at 1175.342 kb on + strand, within SMa2081at 1175.342 kb on + strand, within SMa2081at 1175.343 kb on - strand, within SMa2081at 1175.406 kb on - strand, within SMa2081at 1175.406 kb on - strand, within SMa2081at 1175.421 kb on + strand, within SMa2081at 1175.639 kb on + strand, within SMa2081at 1176.095 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,173,270 - SMa2077 0.18 +0.8
1,173,270 - SMa2077 0.18 +2.0
1,173,497 + SMa2077 0.39 +1.0
1,173,498 - SMa2077 0.39 +0.4
1,173,498 - SMa2077 0.39 +0.2
1,173,498 - SMa2077 0.39 -1.1
1,173,532 - SMa2077 0.42 +0.2
1,173,533 + SMa2077 0.42 +0.3
1,173,534 - SMa2077 0.43 +0.7
1,173,555 - SMa2077 0.45 +1.5
1,173,608 + SMa2077 0.50 -1.6
1,173,609 - SMa2077 0.50 -0.1
1,173,609 - SMa2077 0.50 -0.3
1,173,609 - SMa2077 0.50 -0.2
1,173,791 + SMa2077 0.67 -0.4
1,173,805 - SMa2077 0.68 -1.1
1,173,805 - SMa2077 0.68 +0.0
1,173,806 + SMa2077 0.68 -0.5
1,173,806 + SMa2077 0.68 +0.4
1,173,807 - SMa2077 0.68 +1.7
1,173,807 - SMa2077 0.68 +1.5
1,173,807 - SMa2077 0.68 -0.3
1,173,807 - SMa2077 0.68 -0.7
1,173,849 - SMa2077 0.72 -0.1
1,173,849 - SMa2077 0.72 -0.2
1,173,983 + SMa2077 0.85 -0.0
1,173,983 + SMa2077 0.85 +0.8
1,174,039 - -0.5
1,174,127 + -0.9
1,174,365 + SMa2079 0.22 -1.6
1,174,376 + SMa2079 0.23 -0.2
1,174,378 + SMa2079 0.23 -1.2
1,174,379 - SMa2079 0.23 +0.6
1,174,442 - SMa2079 0.30 +0.2
1,174,442 - SMa2079 0.30 +0.1
1,174,442 - SMa2079 0.30 -0.5
1,174,469 - SMa2079 0.33 -0.1
1,174,504 + SMa2079 0.37 -0.2
1,174,733 + SMa2079 0.61 -0.1
1,174,811 + SMa2079 0.69 -0.5
1,175,340 + SMa2081 0.26 +0.5
1,175,342 + SMa2081 0.26 -0.3
1,175,342 + SMa2081 0.26 -1.3
1,175,343 - SMa2081 0.26 +0.1
1,175,406 - SMa2081 0.33 +0.6
1,175,406 - SMa2081 0.33 +0.0
1,175,421 + SMa2081 0.34 +0.0
1,175,639 + SMa2081 0.56 +0.0
1,176,095 + -0.3

Or see this region's nucleotide sequence