Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2073 and SMa2075 are separated by 87 nucleotides SMa2075 and SMa2077 are separated by 686 nucleotides
SMa2073: SMa2073 - hypothetical protein, at 1,169,453 to 1,170,676
SMa2073
SMa2075: SMa2075 - ABC transporter substrate-binding protein, at 1,170,764 to 1,172,395
SMa2075
SMa2077: SMa2077 - oxidoreductase, at 1,173,082 to 1,174,143
SMa2077
Position (kb)
1170
1171
1172
1173 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1169.791 kb on + strand, within SMa2073 at 1169.898 kb on + strand, within SMa2073 at 1169.898 kb on + strand, within SMa2073 at 1170.030 kb on - strand, within SMa2073 at 1170.229 kb on + strand, within SMa2073 at 1170.230 kb on - strand, within SMa2073 at 1170.231 kb on + strand, within SMa2073 at 1170.232 kb on - strand, within SMa2073 at 1170.232 kb on - strand, within SMa2073 at 1170.238 kb on - strand, within SMa2073 at 1170.387 kb on + strand, within SMa2073 at 1170.404 kb on + strand, within SMa2073 at 1170.404 kb on + strand, within SMa2073 at 1170.457 kb on + strand, within SMa2073 at 1170.460 kb on - strand, within SMa2073 at 1170.460 kb on - strand, within SMa2073 at 1170.460 kb on - strand, within SMa2073 at 1170.751 kb on + strand at 1170.752 kb on - strand at 1170.766 kb on - strand at 1170.783 kb on + strand at 1170.783 kb on + strand at 1170.890 kb on + strand at 1170.890 kb on + strand at 1170.890 kb on + strand at 1170.999 kb on + strand, within SMa2075 at 1171.050 kb on + strand, within SMa2075 at 1171.080 kb on + strand, within SMa2075 at 1171.081 kb on - strand, within SMa2075 at 1171.081 kb on - strand, within SMa2075 at 1171.209 kb on + strand, within SMa2075 at 1171.210 kb on - strand, within SMa2075 at 1171.210 kb on - strand, within SMa2075 at 1171.294 kb on - strand, within SMa2075 at 1171.341 kb on + strand, within SMa2075 at 1171.384 kb on + strand, within SMa2075 at 1171.420 kb on - strand, within SMa2075 at 1171.491 kb on + strand, within SMa2075 at 1171.492 kb on - strand, within SMa2075 at 1171.536 kb on + strand, within SMa2075 at 1171.537 kb on - strand, within SMa2075 at 1171.719 kb on + strand, within SMa2075 at 1171.719 kb on + strand, within SMa2075 at 1171.776 kb on + strand, within SMa2075 at 1171.776 kb on + strand, within SMa2075 at 1171.777 kb on - strand, within SMa2075 at 1171.777 kb on - strand, within SMa2075 at 1171.837 kb on - strand, within SMa2075 at 1172.149 kb on - strand, within SMa2075 at 1172.184 kb on + strand, within SMa2075 at 1172.185 kb on - strand, within SMa2075 at 1172.188 kb on - strand, within SMa2075 at 1172.188 kb on - strand, within SMa2075 at 1172.398 kb on + strand at 1172.399 kb on - strand at 1172.399 kb on - strand at 1172.399 kb on - strand at 1172.399 kb on - strand at 1172.401 kb on + strand at 1172.402 kb on - strand at 1172.408 kb on - strand at 1172.458 kb on - strand at 1172.472 kb on - strand at 1172.494 kb on + strand at 1172.716 kb on - strand at 1172.716 kb on - strand at 1172.737 kb on + strand at 1172.757 kb on + strand at 1172.885 kb on + strand at 1172.988 kb on - strand at 1172.988 kb on - strand at 1173.270 kb on - strand, within SMa2077 at 1173.270 kb on - strand, within SMa2077
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 1,169,791 + SMa2073 0.28 +0.1 1,169,898 + SMa2073 0.36 +0.8 1,169,898 + SMa2073 0.36 +0.0 1,170,030 - SMa2073 0.47 -1.4 1,170,229 + SMa2073 0.63 +0.8 1,170,230 - SMa2073 0.63 -0.1 1,170,231 + SMa2073 0.64 +0.0 1,170,232 - SMa2073 0.64 -0.5 1,170,232 - SMa2073 0.64 -0.6 1,170,238 - SMa2073 0.64 -0.4 1,170,387 + SMa2073 0.76 -0.9 1,170,404 + SMa2073 0.78 -0.4 1,170,404 + SMa2073 0.78 -0.1 1,170,457 + SMa2073 0.82 -1.0 1,170,460 - SMa2073 0.82 +1.4 1,170,460 - SMa2073 0.82 -0.3 1,170,460 - SMa2073 0.82 -0.8 1,170,751 + -0.1 1,170,752 - +0.2 1,170,766 - +0.3 1,170,783 + -0.7 1,170,783 + +1.4 1,170,890 + +1.8 1,170,890 + +0.1 1,170,890 + +0.7 1,170,999 + SMa2075 0.14 -0.5 1,171,050 + SMa2075 0.18 +0.2 1,171,080 + SMa2075 0.19 -0.2 1,171,081 - SMa2075 0.19 +0.2 1,171,081 - SMa2075 0.19 +0.0 1,171,209 + SMa2075 0.27 +1.3 1,171,210 - SMa2075 0.27 -1.1 1,171,210 - SMa2075 0.27 -0.7 1,171,294 - SMa2075 0.32 +1.7 1,171,341 + SMa2075 0.35 -0.1 1,171,384 + SMa2075 0.38 -1.3 1,171,420 - SMa2075 0.40 +0.0 1,171,491 + SMa2075 0.45 -0.8 1,171,492 - SMa2075 0.45 -0.7 1,171,536 + SMa2075 0.47 +0.1 1,171,537 - SMa2075 0.47 -0.1 1,171,719 + SMa2075 0.59 -0.3 1,171,719 + SMa2075 0.59 -0.3 1,171,776 + SMa2075 0.62 -2.9 1,171,776 + SMa2075 0.62 +0.6 1,171,777 - SMa2075 0.62 +0.8 1,171,777 - SMa2075 0.62 +0.5 1,171,837 - SMa2075 0.66 -0.2 1,172,149 - SMa2075 0.85 +0.5 1,172,184 + SMa2075 0.87 +0.1 1,172,185 - SMa2075 0.87 +0.5 1,172,188 - SMa2075 0.87 +0.0 1,172,188 - SMa2075 0.87 -0.5 1,172,398 + +0.3 1,172,399 - -0.3 1,172,399 - -0.6 1,172,399 - -0.9 1,172,399 - +0.1 1,172,401 + +0.3 1,172,402 - +0.2 1,172,408 - +0.3 1,172,458 - +0.7 1,172,472 - -0.1 1,172,494 + -0.3 1,172,716 - -0.4 1,172,716 - -0.3 1,172,737 + +0.7 1,172,757 + -0.7 1,172,885 + -1.0 1,172,988 - -0.2 1,172,988 - -1.0 1,173,270 - SMa2077 0.18 +0.8 1,173,270 - SMa2077 0.18 +2.0
Or see this region's nucleotide sequence