Strain Fitness in Sinorhizobium meliloti 1021 around SMa2075

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2073 and SMa2075 are separated by 87 nucleotidesSMa2075 and SMa2077 are separated by 686 nucleotides SMa2073: SMa2073 - hypothetical protein, at 1,169,453 to 1,170,676 SMa2073 SMa2075: SMa2075 - ABC transporter substrate-binding protein, at 1,170,764 to 1,172,395 SMa2075 SMa2077: SMa2077 - oxidoreductase, at 1,173,082 to 1,174,143 SMa2077 Position (kb) 1170 1171 1172 1173Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1169.791 kb on + strand, within SMa2073at 1169.898 kb on + strand, within SMa2073at 1169.898 kb on + strand, within SMa2073at 1170.030 kb on - strand, within SMa2073at 1170.229 kb on + strand, within SMa2073at 1170.230 kb on - strand, within SMa2073at 1170.231 kb on + strand, within SMa2073at 1170.232 kb on - strand, within SMa2073at 1170.232 kb on - strand, within SMa2073at 1170.238 kb on - strand, within SMa2073at 1170.387 kb on + strand, within SMa2073at 1170.404 kb on + strand, within SMa2073at 1170.404 kb on + strand, within SMa2073at 1170.457 kb on + strand, within SMa2073at 1170.460 kb on - strand, within SMa2073at 1170.460 kb on - strand, within SMa2073at 1170.460 kb on - strand, within SMa2073at 1170.751 kb on + strandat 1170.752 kb on - strandat 1170.766 kb on - strandat 1170.783 kb on + strandat 1170.783 kb on + strandat 1170.890 kb on + strandat 1170.890 kb on + strandat 1170.890 kb on + strandat 1170.999 kb on + strand, within SMa2075at 1171.050 kb on + strand, within SMa2075at 1171.080 kb on + strand, within SMa2075at 1171.081 kb on - strand, within SMa2075at 1171.081 kb on - strand, within SMa2075at 1171.209 kb on + strand, within SMa2075at 1171.210 kb on - strand, within SMa2075at 1171.210 kb on - strand, within SMa2075at 1171.294 kb on - strand, within SMa2075at 1171.341 kb on + strand, within SMa2075at 1171.384 kb on + strand, within SMa2075at 1171.420 kb on - strand, within SMa2075at 1171.491 kb on + strand, within SMa2075at 1171.492 kb on - strand, within SMa2075at 1171.536 kb on + strand, within SMa2075at 1171.537 kb on - strand, within SMa2075at 1171.719 kb on + strand, within SMa2075at 1171.719 kb on + strand, within SMa2075at 1171.776 kb on + strand, within SMa2075at 1171.776 kb on + strand, within SMa2075at 1171.777 kb on - strand, within SMa2075at 1171.777 kb on - strand, within SMa2075at 1171.837 kb on - strand, within SMa2075at 1172.149 kb on - strand, within SMa2075at 1172.184 kb on + strand, within SMa2075at 1172.185 kb on - strand, within SMa2075at 1172.188 kb on - strand, within SMa2075at 1172.188 kb on - strand, within SMa2075at 1172.398 kb on + strandat 1172.399 kb on - strandat 1172.399 kb on - strandat 1172.399 kb on - strandat 1172.399 kb on - strandat 1172.401 kb on + strandat 1172.402 kb on - strandat 1172.408 kb on - strandat 1172.458 kb on - strandat 1172.472 kb on - strandat 1172.494 kb on + strandat 1172.716 kb on - strandat 1172.716 kb on - strandat 1172.737 kb on + strandat 1172.757 kb on + strandat 1172.885 kb on + strandat 1172.988 kb on - strandat 1172.988 kb on - strandat 1173.270 kb on - strand, within SMa2077at 1173.270 kb on - strand, within SMa2077

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,169,791 + SMa2073 0.28 +0.1
1,169,898 + SMa2073 0.36 +0.8
1,169,898 + SMa2073 0.36 +0.0
1,170,030 - SMa2073 0.47 -1.4
1,170,229 + SMa2073 0.63 +0.8
1,170,230 - SMa2073 0.63 -0.1
1,170,231 + SMa2073 0.64 +0.0
1,170,232 - SMa2073 0.64 -0.5
1,170,232 - SMa2073 0.64 -0.6
1,170,238 - SMa2073 0.64 -0.4
1,170,387 + SMa2073 0.76 -0.9
1,170,404 + SMa2073 0.78 -0.4
1,170,404 + SMa2073 0.78 -0.1
1,170,457 + SMa2073 0.82 -1.0
1,170,460 - SMa2073 0.82 +1.4
1,170,460 - SMa2073 0.82 -0.3
1,170,460 - SMa2073 0.82 -0.8
1,170,751 + -0.1
1,170,752 - +0.2
1,170,766 - +0.3
1,170,783 + -0.7
1,170,783 + +1.4
1,170,890 + +1.8
1,170,890 + +0.1
1,170,890 + +0.7
1,170,999 + SMa2075 0.14 -0.5
1,171,050 + SMa2075 0.18 +0.2
1,171,080 + SMa2075 0.19 -0.2
1,171,081 - SMa2075 0.19 +0.2
1,171,081 - SMa2075 0.19 +0.0
1,171,209 + SMa2075 0.27 +1.3
1,171,210 - SMa2075 0.27 -1.1
1,171,210 - SMa2075 0.27 -0.7
1,171,294 - SMa2075 0.32 +1.7
1,171,341 + SMa2075 0.35 -0.1
1,171,384 + SMa2075 0.38 -1.3
1,171,420 - SMa2075 0.40 +0.0
1,171,491 + SMa2075 0.45 -0.8
1,171,492 - SMa2075 0.45 -0.7
1,171,536 + SMa2075 0.47 +0.1
1,171,537 - SMa2075 0.47 -0.1
1,171,719 + SMa2075 0.59 -0.3
1,171,719 + SMa2075 0.59 -0.3
1,171,776 + SMa2075 0.62 -2.9
1,171,776 + SMa2075 0.62 +0.6
1,171,777 - SMa2075 0.62 +0.8
1,171,777 - SMa2075 0.62 +0.5
1,171,837 - SMa2075 0.66 -0.2
1,172,149 - SMa2075 0.85 +0.5
1,172,184 + SMa2075 0.87 +0.1
1,172,185 - SMa2075 0.87 +0.5
1,172,188 - SMa2075 0.87 +0.0
1,172,188 - SMa2075 0.87 -0.5
1,172,398 + +0.3
1,172,399 - -0.3
1,172,399 - -0.6
1,172,399 - -0.9
1,172,399 - +0.1
1,172,401 + +0.3
1,172,402 - +0.2
1,172,408 - +0.3
1,172,458 - +0.7
1,172,472 - -0.1
1,172,494 + -0.3
1,172,716 - -0.4
1,172,716 - -0.3
1,172,737 + +0.7
1,172,757 + -0.7
1,172,885 + -1.0
1,172,988 - -0.2
1,172,988 - -1.0
1,173,270 - SMa2077 0.18 +0.8
1,173,270 - SMa2077 0.18 +2.0

Or see this region's nucleotide sequence