Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1410 and SMa1413 are separated by 396 nucleotides SMa1413 and SMa1414 are separated by 227 nucleotides SMa1414 and SMa1415 overlap by 1 nucleotides
SMa1410: SMa1410 - oxidoreductase, at 775,888 to 776,721
SMa1410
SMa1413: SMa1413 - hypothetical protein, at 777,118 to 777,393
SMa1413
SMa1414: SMa1414 - Dehydrogenase, FAD-dependent, at 777,621 to 779,216
SMa1414
SMa1415: SMa1415 - aldehyde dehydrogenase, at 779,216 to 780,712
SMa1415
Position (kb) 777
778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.668 kb on + strand at 776.668 kb on + strand at 776.720 kb on - strand at 776.764 kb on + strand at 776.789 kb on - strand at 776.814 kb on - strand at 776.814 kb on - strand at 776.839 kb on + strand at 776.864 kb on + strand at 776.864 kb on + strand at 776.864 kb on + strand at 776.865 kb on - strand at 776.865 kb on - strand at 776.865 kb on - strand at 776.871 kb on - strand at 776.893 kb on - strand at 776.893 kb on - strand at 776.934 kb on + strand at 776.934 kb on + strand at 776.934 kb on + strand at 776.935 kb on - strand at 776.935 kb on - strand at 776.935 kb on - strand at 776.936 kb on + strand at 776.936 kb on + strand at 776.957 kb on + strand at 776.957 kb on + strand at 776.958 kb on - strand at 776.959 kb on + strand at 776.960 kb on - strand at 776.960 kb on - strand at 777.058 kb on + strand at 777.058 kb on + strand at 777.331 kb on + strand, within SMa1413 at 777.331 kb on + strand, within SMa1413 at 777.534 kb on + strand at 777.534 kb on + strand at 777.535 kb on - strand at 777.562 kb on - strand at 777.672 kb on - strand at 777.776 kb on + strand at 777.777 kb on - strand at 777.777 kb on - strand at 777.777 kb on - strand at 777.841 kb on + strand, within SMa1414 at 778.285 kb on + strand, within SMa1414 at 778.285 kb on + strand, within SMa1414 at 778.285 kb on + strand, within SMa1414 at 778.371 kb on - strand, within SMa1414 at 778.371 kb on - strand, within SMa1414 at 778.442 kb on + strand, within SMa1414 at 778.520 kb on - strand, within SMa1414 at 778.618 kb on + strand, within SMa1414 at 778.619 kb on - strand, within SMa1414 at 778.666 kb on + strand, within SMa1414 at 778.710 kb on - strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.830 kb on - strand, within SMa1414 at 778.852 kb on + strand, within SMa1414 at 778.853 kb on - strand, within SMa1414 at 778.909 kb on + strand, within SMa1414 at 778.910 kb on - strand, within SMa1414 at 778.931 kb on + strand, within SMa1414 at 778.931 kb on + strand, within SMa1414 at 778.933 kb on + strand, within SMa1414 at 779.259 kb on + strand at 779.272 kb on + strand at 779.272 kb on + strand at 779.273 kb on - strand at 779.273 kb on - strand at 779.275 kb on - strand at 779.275 kb on - strand at 779.275 kb on - strand at 779.290 kb on - strand at 779.365 kb on + strand at 779.365 kb on + strand at 779.366 kb on - strand, within SMa1415 at 779.423 kb on - strand, within SMa1415 at 779.590 kb on - strand, within SMa1415 at 779.590 kb on - strand, within SMa1415 at 779.662 kb on + strand, within SMa1415 at 779.662 kb on + strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 780.076 kb on + strand, within SMa1415 at 780.076 kb on + strand, within SMa1415 at 780.077 kb on - strand, within SMa1415 at 780.078 kb on + strand, within SMa1415 at 780.079 kb on - strand, within SMa1415 at 780.212 kb on - strand, within SMa1415
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 776,668 + +0.2 776,668 + +0.8 776,720 - +0.6 776,764 + +0.5 776,789 - -0.2 776,814 - +0.8 776,814 - -1.3 776,839 + +1.1 776,864 + -0.5 776,864 + -1.0 776,864 + +0.1 776,865 - -0.7 776,865 - +0.5 776,865 - +0.8 776,871 - -0.5 776,893 - +0.5 776,893 - +0.5 776,934 + -0.2 776,934 + +0.5 776,934 + -0.7 776,935 - +0.0 776,935 - +0.1 776,935 - -0.0 776,936 + -0.5 776,936 + -0.0 776,957 + -0.4 776,957 + +1.0 776,958 - +0.4 776,959 + -1.6 776,960 - -1.7 776,960 - -0.9 777,058 + +0.3 777,058 + -0.3 777,331 + SMa1413 0.77 +0.4 777,331 + SMa1413 0.77 +0.6 777,534 + -0.9 777,534 + -0.5 777,535 - +0.1 777,562 - +0.4 777,672 - +1.0 777,776 + +0.4 777,777 - -0.8 777,777 - -0.3 777,777 - +0.1 777,841 + SMa1414 0.14 +1.0 778,285 + SMa1414 0.42 -1.0 778,285 + SMa1414 0.42 -0.1 778,285 + SMa1414 0.42 +0.1 778,371 - SMa1414 0.47 -0.3 778,371 - SMa1414 0.47 -0.9 778,442 + SMa1414 0.51 -0.7 778,520 - SMa1414 0.56 -1.0 778,618 + SMa1414 0.62 +0.0 778,619 - SMa1414 0.63 -0.1 778,666 + SMa1414 0.65 +0.4 778,710 - SMa1414 0.68 +0.3 778,829 + SMa1414 0.76 +0.3 778,829 + SMa1414 0.76 +0.1 778,829 + SMa1414 0.76 -0.2 778,830 - SMa1414 0.76 -0.5 778,852 + SMa1414 0.77 -0.5 778,853 - SMa1414 0.77 -0.4 778,909 + SMa1414 0.81 -0.7 778,910 - SMa1414 0.81 -0.7 778,931 + SMa1414 0.82 -0.9 778,931 + SMa1414 0.82 +0.7 778,933 + SMa1414 0.82 -0.5 779,259 + +0.4 779,272 + +0.4 779,272 + +0.5 779,273 - -2.8 779,273 - -1.0 779,275 - -0.1 779,275 - -0.3 779,275 - -0.0 779,290 - -0.6 779,365 + -0.3 779,365 + +2.3 779,366 - SMa1415 0.10 +0.2 779,423 - SMa1415 0.14 -0.1 779,590 - SMa1415 0.25 -0.9 779,590 - SMa1415 0.25 -0.2 779,662 + SMa1415 0.30 -2.6 779,662 + SMa1415 0.30 -0.5 779,665 - SMa1415 0.30 +1.0 779,665 - SMa1415 0.30 +0.5 779,665 - SMa1415 0.30 -0.5 780,076 + SMa1415 0.57 -0.2 780,076 + SMa1415 0.57 +0.2 780,077 - SMa1415 0.58 -0.1 780,078 + SMa1415 0.58 +0.5 780,079 - SMa1415 0.58 -0.7 780,212 - SMa1415 0.67 +0.6
Or see this region's nucleotide sequence