Strain Fitness in Sinorhizobium meliloti 1021 around SMa1373

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1371 and SMa1374 are separated by 2 nucleotidesSMa1374 and SMa1373 overlap by 1 nucleotidesSMa1373 and SMa1375 are separated by 78 nucleotides SMa1371: SMa1371 - ABC transporter ATP-binding protein, at 753,652 to 754,632 SMa1371 SMa1374: SMa1374 - ABC transporter permease, at 754,635 to 755,594 SMa1374 SMa1373: SMa1373 - ABC transporter permease, at 755,594 to 756,514 SMa1373 SMa1375: SMa1375 - ABC transporter substrate-binding protein, at 756,593 to 758,077 SMa1375 Position (kb) 755 756 757Strain fitness (log2 ratio) -2 -1 0 1 2at 754.817 kb on - strand, within SMa1374at 754.817 kb on - strand, within SMa1374at 754.887 kb on + strand, within SMa1374at 755.023 kb on + strand, within SMa1374at 755.071 kb on + strand, within SMa1374at 755.157 kb on + strand, within SMa1374at 755.157 kb on + strand, within SMa1374at 755.157 kb on + strand, within SMa1374at 755.157 kb on + strand, within SMa1374at 755.157 kb on + strand, within SMa1374at 755.158 kb on - strand, within SMa1374at 755.346 kb on - strand, within SMa1374at 755.434 kb on + strand, within SMa1374at 755.435 kb on - strand, within SMa1374at 755.435 kb on - strand, within SMa1374at 755.819 kb on - strand, within SMa1373at 755.819 kb on - strand, within SMa1373at 755.846 kb on + strand, within SMa1373at 755.851 kb on + strand, within SMa1373at 755.852 kb on - strand, within SMa1373at 755.866 kb on + strand, within SMa1373at 755.866 kb on + strand, within SMa1373at 755.907 kb on + strand, within SMa1373at 755.907 kb on + strand, within SMa1373at 755.907 kb on + strand, within SMa1373at 755.908 kb on - strand, within SMa1373at 755.983 kb on + strand, within SMa1373at 755.984 kb on - strand, within SMa1373at 756.514 kb on + strandat 756.514 kb on + strandat 756.514 kb on + strandat 756.514 kb on + strandat 756.515 kb on - strandat 756.515 kb on - strandat 756.573 kb on + strandat 756.574 kb on - strandat 756.574 kb on - strandat 756.595 kb on - strandat 756.602 kb on + strandat 756.672 kb on + strandat 756.672 kb on + strandat 756.672 kb on + strandat 756.705 kb on + strandat 756.705 kb on + strandat 756.706 kb on - strandat 756.706 kb on - strandat 756.706 kb on - strandat 757.126 kb on - strand, within SMa1375at 757.126 kb on - strand, within SMa1375at 757.195 kb on - strand, within SMa1375at 757.195 kb on - strand, within SMa1375at 757.273 kb on + strand, within SMa1375at 757.274 kb on - strand, within SMa1375

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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754,817 - SMa1374 0.19 +1.0
754,817 - SMa1374 0.19 +0.4
754,887 + SMa1374 0.26 +0.1
755,023 + SMa1374 0.40 +0.4
755,071 + SMa1374 0.45 +0.1
755,157 + SMa1374 0.54 +0.6
755,157 + SMa1374 0.54 +0.5
755,157 + SMa1374 0.54 -2.1
755,157 + SMa1374 0.54 +0.5
755,157 + SMa1374 0.54 -0.2
755,158 - SMa1374 0.54 +0.1
755,346 - SMa1374 0.74 -0.2
755,434 + SMa1374 0.83 +0.6
755,435 - SMa1374 0.83 -0.0
755,435 - SMa1374 0.83 -0.0
755,819 - SMa1373 0.24 -1.2
755,819 - SMa1373 0.24 +0.3
755,846 + SMa1373 0.27 -1.5
755,851 + SMa1373 0.28 +0.2
755,852 - SMa1373 0.28 +0.8
755,866 + SMa1373 0.30 -0.0
755,866 + SMa1373 0.30 -1.0
755,907 + SMa1373 0.34 -0.1
755,907 + SMa1373 0.34 -0.0
755,907 + SMa1373 0.34 -0.9
755,908 - SMa1373 0.34 -0.4
755,983 + SMa1373 0.42 +0.6
755,984 - SMa1373 0.42 -0.8
756,514 + +0.1
756,514 + +1.1
756,514 + +0.4
756,514 + -0.2
756,515 - +0.5
756,515 - +1.0
756,573 + +0.6
756,574 - +0.2
756,574 - +0.0
756,595 - +1.0
756,602 + -1.0
756,672 + -1.5
756,672 + +0.8
756,672 + -0.9
756,705 + +0.2
756,705 + -0.3
756,706 - +1.9
756,706 - +0.6
756,706 - +0.2
757,126 - SMa1375 0.36 -0.3
757,126 - SMa1375 0.36 +0.6
757,195 - SMa1375 0.41 +0.4
757,195 - SMa1375 0.41 +1.4
757,273 + SMa1375 0.46 -0.3
757,274 - SMa1375 0.46 -0.0

Or see this region's nucleotide sequence