Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1311 and SMa1313 are separated by 229 nucleotides SMa1313 and SMa1315 overlap by 1 nucleotides
SMa1311: SMa1311 - VirB6 type IV secretion protein, at 715,261 to 716,202
SMa1311
SMa1313: SMa1313 - VirB5 type IV secretion protein, at 716,432 to 717,133
SMa1313
SMa1315: SMa1315 - VirB4 type IV secretion protein, at 717,133 to 719,511
SMa1315
Position (kb) 716
717
718 Strain fitness (log2 ratio) -2
-1
0
1
2 at 715.445 kb on + strand, within SMa1311 at 715.445 kb on + strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.556 kb on - strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.725 kb on - strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.072 kb on + strand, within SMa1311 at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.365 kb on + strand at 716.366 kb on - strand at 716.366 kb on - strand at 716.402 kb on + strand at 716.402 kb on + strand at 716.547 kb on - strand, within SMa1313 at 716.679 kb on + strand, within SMa1313 at 716.745 kb on + strand, within SMa1313 at 716.745 kb on + strand, within SMa1313 at 716.773 kb on - strand, within SMa1313 at 716.779 kb on + strand, within SMa1313 at 716.779 kb on + strand, within SMa1313 at 716.780 kb on - strand, within SMa1313 at 717.116 kb on - strand at 717.116 kb on - strand at 717.298 kb on - strand at 717.392 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.654 kb on - strand, within SMa1315 at 717.708 kb on - strand, within SMa1315 at 718.007 kb on - strand, within SMa1315 at 718.064 kb on + strand, within SMa1315 at 718.064 kb on + strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.088 kb on + strand, within SMa1315 at 718.111 kb on - strand, within SMa1315
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 715,445 + SMa1311 0.20 -0.1 715,445 + SMa1311 0.20 -1.2 715,446 - SMa1311 0.20 -0.4 715,446 - SMa1311 0.20 -2.7 715,454 + SMa1311 0.20 -0.2 715,454 + SMa1311 0.20 -0.5 715,454 + SMa1311 0.20 -0.3 715,454 + SMa1311 0.20 +1.2 715,454 + SMa1311 0.20 +0.8 715,455 - SMa1311 0.21 -0.3 715,455 - SMa1311 0.21 -0.3 715,455 - SMa1311 0.21 -0.1 715,509 + SMa1311 0.26 +0.8 715,509 + SMa1311 0.26 +0.1 715,509 + SMa1311 0.26 -0.6 715,510 - SMa1311 0.26 +0.1 715,510 - SMa1311 0.26 -0.6 715,556 - SMa1311 0.31 +0.4 715,722 + SMa1311 0.49 -1.2 715,722 + SMa1311 0.49 -0.3 715,725 - SMa1311 0.49 +0.5 715,943 + SMa1311 0.72 -0.5 715,943 + SMa1311 0.72 +0.1 715,943 + SMa1311 0.72 +1.0 715,944 - SMa1311 0.73 -0.3 715,944 - SMa1311 0.73 -0.7 716,061 - SMa1311 0.85 +0.2 716,061 - SMa1311 0.85 -1.1 716,072 + SMa1311 0.86 +1.1 716,192 + -0.7 716,192 + +0.4 716,192 + +0.6 716,192 + +0.5 716,193 - +1.4 716,193 - -0.6 716,193 - +1.3 716,365 + +0.5 716,366 - -0.3 716,366 - -0.3 716,402 + +0.4 716,402 + +0.2 716,547 - SMa1313 0.16 +1.7 716,679 + SMa1313 0.35 +0.1 716,745 + SMa1313 0.45 +1.6 716,745 + SMa1313 0.45 +0.7 716,773 - SMa1313 0.49 +1.0 716,779 + SMa1313 0.49 +0.0 716,779 + SMa1313 0.49 -0.6 716,780 - SMa1313 0.50 +0.5 717,116 - +0.7 717,116 - -0.1 717,298 - +0.1 717,392 + SMa1315 0.11 -0.4 717,653 + SMa1315 0.22 -0.4 717,653 + SMa1315 0.22 +0.2 717,653 + SMa1315 0.22 +0.0 717,653 + SMa1315 0.22 +2.1 717,654 - SMa1315 0.22 -0.3 717,708 - SMa1315 0.24 -0.7 718,007 - SMa1315 0.37 -0.7 718,064 + SMa1315 0.39 +1.3 718,064 + SMa1315 0.39 -0.6 718,065 - SMa1315 0.39 -0.2 718,065 - SMa1315 0.39 +0.0 718,065 - SMa1315 0.39 +0.1 718,088 + SMa1315 0.40 -0.2 718,111 - SMa1315 0.41 -1.4
Or see this region's nucleotide sequence