Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1269 and SMa1272 are separated by 4 nucleotides SMa1272 and SMa1273 are separated by 59 nucleotides SMa1273 and SMa1276 are separated by 24 nucleotides SMa1276 and SMa1279 are separated by 458 nucleotides
SMa1269: SMa1269 - NorD accessory protein for nitric oxide reductase, at 693,908 to 695,803
SMa1269
SMa1272: SMa1272 - NorQ accessory protein for nitric oxide reductase, at 695,808 to 696,626
SMa1272
SMa1273: SMa1273 - NorB nitric oxide reductase, large subunit, at 696,686 to 698,032
SMa1273
SMa1276: SMa1276 - NorC nitric oxide reductase, small subunit, at 698,057 to 698,509
SMa1276
SMa1279: SMa1279 - NorE accessory protein for nitric oxide reductase, at 698,968 to 699,534
SMa1279
Position (kb) 696
697
698
699 Strain fitness (log2 ratio) -2
-1
0
1 at 695.741 kb on - strand at 695.805 kb on + strand at 695.806 kb on - strand at 695.810 kb on - strand at 695.945 kb on - strand, within SMa1272 at 695.945 kb on - strand, within SMa1272 at 696.000 kb on + strand, within SMa1272 at 696.310 kb on + strand, within SMa1272 at 696.464 kb on + strand, within SMa1272 at 696.574 kb on + strand at 696.626 kb on + strand at 696.632 kb on - strand at 696.725 kb on - strand at 696.779 kb on + strand at 696.779 kb on + strand at 696.780 kb on - strand at 696.967 kb on - strand, within SMa1273 at 696.967 kb on - strand, within SMa1273 at 696.967 kb on - strand, within SMa1273 at 697.000 kb on - strand, within SMa1273 at 697.029 kb on + strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.086 kb on + strand, within SMa1273 at 697.086 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.108 kb on + strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.317 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.485 kb on + strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.495 kb on - strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.611 kb on - strand, within SMa1273 at 697.789 kb on - strand, within SMa1273 at 697.789 kb on - strand, within SMa1273 at 697.821 kb on + strand, within SMa1273 at 697.821 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.825 kb on - strand, within SMa1273 at 697.825 kb on - strand, within SMa1273 at 697.932 kb on + strand at 697.932 kb on + strand at 697.933 kb on - strand at 697.998 kb on + strand at 698.290 kb on - strand, within SMa1276 at 698.311 kb on + strand, within SMa1276 at 698.406 kb on + strand, within SMa1276 at 698.407 kb on - strand, within SMa1276 at 698.407 kb on - strand, within SMa1276 at 698.409 kb on + strand, within SMa1276 at 698.409 kb on + strand, within SMa1276 at 698.616 kb on + strand at 698.617 kb on - strand at 698.617 kb on - strand at 698.921 kb on + strand at 698.978 kb on + strand at 698.979 kb on - strand at 698.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 695,741 - +0.4 695,805 + +0.1 695,806 - +1.0 695,810 - +0.1 695,945 - SMa1272 0.17 +0.2 695,945 - SMa1272 0.17 -0.8 696,000 + SMa1272 0.23 -0.5 696,310 + SMa1272 0.61 -0.4 696,464 + SMa1272 0.80 -1.1 696,574 + +1.1 696,626 + -0.4 696,632 - -0.1 696,725 - +0.2 696,779 + -1.7 696,779 + +0.1 696,780 - +0.0 696,967 - SMa1273 0.21 +0.3 696,967 - SMa1273 0.21 +1.1 696,967 - SMa1273 0.21 +0.6 697,000 - SMa1273 0.23 -0.2 697,029 + SMa1273 0.25 +0.1 697,030 - SMa1273 0.26 +0.3 697,030 - SMa1273 0.26 -0.9 697,030 - SMa1273 0.26 -1.1 697,086 + SMa1273 0.30 +0.3 697,086 + SMa1273 0.30 -0.2 697,089 + SMa1273 0.30 +0.5 697,089 + SMa1273 0.30 -0.8 697,090 - SMa1273 0.30 +0.4 697,090 - SMa1273 0.30 -0.2 697,090 - SMa1273 0.30 +0.2 697,090 - SMa1273 0.30 -0.5 697,090 - SMa1273 0.30 -0.6 697,108 + SMa1273 0.31 +0.2 697,315 - SMa1273 0.47 -0.2 697,315 - SMa1273 0.47 -2.0 697,317 + SMa1273 0.47 +1.5 697,371 + SMa1273 0.51 -0.0 697,371 + SMa1273 0.51 -0.3 697,371 + SMa1273 0.51 -0.6 697,371 + SMa1273 0.51 -0.3 697,372 - SMa1273 0.51 -1.3 697,372 - SMa1273 0.51 +0.2 697,372 - SMa1273 0.51 +1.2 697,372 - SMa1273 0.51 +0.2 697,485 + SMa1273 0.59 +0.8 697,486 - SMa1273 0.59 +0.8 697,486 - SMa1273 0.59 +0.0 697,494 + SMa1273 0.60 +0.2 697,494 + SMa1273 0.60 +0.1 697,495 - SMa1273 0.60 +0.6 697,527 + SMa1273 0.62 -1.4 697,527 + SMa1273 0.62 -1.6 697,611 - SMa1273 0.69 -0.2 697,789 - SMa1273 0.82 -0.1 697,789 - SMa1273 0.82 +0.5 697,821 + SMa1273 0.84 +0.3 697,821 + SMa1273 0.84 +1.1 697,824 + SMa1273 0.84 +1.0 697,824 + SMa1273 0.84 +0.2 697,824 + SMa1273 0.84 -0.0 697,824 + SMa1273 0.84 +1.2 697,825 - SMa1273 0.85 +0.4 697,825 - SMa1273 0.85 -0.0 697,932 + -0.1 697,932 + -0.6 697,933 - -0.8 697,998 + +0.7 698,290 - SMa1276 0.51 -0.3 698,311 + SMa1276 0.56 +1.7 698,406 + SMa1276 0.77 -0.1 698,407 - SMa1276 0.77 +0.2 698,407 - SMa1276 0.77 +0.1 698,409 + SMa1276 0.78 +0.3 698,409 + SMa1276 0.78 -2.7 698,616 + +0.2 698,617 - -2.0 698,617 - -0.1 698,921 + +0.3 698,978 + -0.2 698,979 - -0.1 698,979 - -0.2
Or see this region's nucleotide sequence