Strain Fitness in Sinorhizobium meliloti 1021 around SMa0690

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0689 and SMa0690 are separated by 20 nucleotidesSMa0690 and SMa0693 are separated by 851 nucleotides SMa0689: SMa0689 - hypothetical protein, at 372,485 to 373,435 SMa0689 SMa0690: SMa0690 - hypothetical protein, at 373,456 to 374,856 SMa0690 SMa0693: SMa0693 - arginine deiminase, at 375,708 to 376,937 SMa0693 Position (kb) 373 374 375Strain fitness (log2 ratio) -1 0 1 2at 372.530 kb on + strandat 372.531 kb on - strandat 372.531 kb on - strandat 372.531 kb on - strandat 372.576 kb on + strandat 372.577 kb on - strandat 372.684 kb on + strand, within SMa0689at 372.690 kb on + strand, within SMa0689at 372.751 kb on - strand, within SMa0689at 372.751 kb on - strand, within SMa0689at 372.794 kb on - strand, within SMa0689at 372.794 kb on - strand, within SMa0689at 372.841 kb on - strand, within SMa0689at 372.920 kb on + strand, within SMa0689at 372.921 kb on - strand, within SMa0689at 372.921 kb on - strand, within SMa0689at 372.924 kb on + strand, within SMa0689at 372.924 kb on + strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.945 kb on + strand, within SMa0689at 372.945 kb on + strand, within SMa0689at 372.945 kb on + strand, within SMa0689at 372.946 kb on - strand, within SMa0689at 372.946 kb on - strand, within SMa0689at 373.020 kb on + strand, within SMa0689at 373.021 kb on - strand, within SMa0689at 373.021 kb on - strand, within SMa0689at 373.321 kb on - strand, within SMa0689at 373.422 kb on - strandat 373.422 kb on - strandat 373.424 kb on + strandat 373.425 kb on - strandat 373.425 kb on - strandat 373.425 kb on - strandat 373.425 kb on - strandat 373.435 kb on + strandat 373.873 kb on + strand, within SMa0690at 373.873 kb on + strand, within SMa0690at 373.873 kb on + strand, within SMa0690at 373.874 kb on - strand, within SMa0690at 373.874 kb on - strand, within SMa0690at 373.968 kb on + strand, within SMa0690at 374.080 kb on + strand, within SMa0690at 374.080 kb on + strand, within SMa0690at 374.080 kb on + strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.229 kb on - strand, within SMa0690at 374.231 kb on + strand, within SMa0690at 374.231 kb on + strand, within SMa0690at 374.232 kb on - strand, within SMa0690at 374.277 kb on - strand, within SMa0690at 374.318 kb on + strand, within SMa0690at 374.318 kb on + strand, within SMa0690at 374.322 kb on + strand, within SMa0690at 374.397 kb on + strand, within SMa0690at 374.462 kb on + strand, within SMa0690at 374.532 kb on - strand, within SMa0690at 374.632 kb on + strand, within SMa0690at 374.641 kb on + strand, within SMa0690at 374.641 kb on + strand, within SMa0690at 374.642 kb on - strand, within SMa0690at 374.642 kb on - strand, within SMa0690at 374.682 kb on - strand, within SMa0690at 374.682 kb on - strand, within SMa0690at 375.079 kb on + strandat 375.184 kb on - strandat 375.188 kb on - strandat 375.191 kb on + strandat 375.192 kb on - strandat 375.195 kb on - strandat 375.247 kb on + strandat 375.247 kb on + strandat 375.248 kb on - strandat 375.251 kb on - strandat 375.379 kb on + strandat 375.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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372,530 + -0.1
372,531 - -0.4
372,531 - -0.8
372,531 - +0.5
372,576 + -0.1
372,577 - -0.6
372,684 + SMa0689 0.21 +1.5
372,690 + SMa0689 0.22 +0.1
372,751 - SMa0689 0.28 +1.1
372,751 - SMa0689 0.28 -0.6
372,794 - SMa0689 0.32 -1.0
372,794 - SMa0689 0.32 -0.5
372,841 - SMa0689 0.37 +0.9
372,920 + SMa0689 0.46 +0.1
372,921 - SMa0689 0.46 +0.2
372,921 - SMa0689 0.46 +0.6
372,924 + SMa0689 0.46 +0.6
372,924 + SMa0689 0.46 -1.6
372,925 - SMa0689 0.46 -0.5
372,925 - SMa0689 0.46 +0.7
372,925 - SMa0689 0.46 +0.7
372,925 - SMa0689 0.46 +0.4
372,945 + SMa0689 0.48 +0.5
372,945 + SMa0689 0.48 -0.0
372,945 + SMa0689 0.48 +1.2
372,946 - SMa0689 0.48 -0.8
372,946 - SMa0689 0.48 -0.1
373,020 + SMa0689 0.56 +0.9
373,021 - SMa0689 0.56 -0.7
373,021 - SMa0689 0.56 -0.6
373,321 - SMa0689 0.88 +0.2
373,422 - -0.2
373,422 - +0.7
373,424 + +0.6
373,425 - -0.7
373,425 - +0.7
373,425 - +1.1
373,425 - +0.1
373,435 + -1.5
373,873 + SMa0690 0.30 +0.6
373,873 + SMa0690 0.30 +0.1
373,873 + SMa0690 0.30 +0.5
373,874 - SMa0690 0.30 -0.6
373,874 - SMa0690 0.30 +0.5
373,968 + SMa0690 0.37 -0.8
374,080 + SMa0690 0.45 +0.2
374,080 + SMa0690 0.45 +0.8
374,080 + SMa0690 0.45 +1.8
374,081 - SMa0690 0.45 +0.6
374,081 - SMa0690 0.45 -1.1
374,081 - SMa0690 0.45 -0.5
374,081 - SMa0690 0.45 +0.2
374,229 - SMa0690 0.55 -0.1
374,231 + SMa0690 0.55 +0.9
374,231 + SMa0690 0.55 +0.4
374,232 - SMa0690 0.55 +0.0
374,277 - SMa0690 0.59 +0.9
374,318 + SMa0690 0.62 -0.4
374,318 + SMa0690 0.62 +0.2
374,322 + SMa0690 0.62 -0.7
374,397 + SMa0690 0.67 +1.3
374,462 + SMa0690 0.72 +0.3
374,532 - SMa0690 0.77 -0.7
374,632 + SMa0690 0.84 +1.9
374,641 + SMa0690 0.85 +0.9
374,641 + SMa0690 0.85 -0.3
374,642 - SMa0690 0.85 -0.5
374,642 - SMa0690 0.85 +0.0
374,682 - SMa0690 0.88 +1.4
374,682 - SMa0690 0.88 +1.0
375,079 + +0.1
375,184 - -0.9
375,188 - -0.9
375,191 + -0.1
375,192 - -0.3
375,195 - -0.8
375,247 + -0.8
375,247 + +0.6
375,248 - +0.5
375,251 - +0.3
375,379 + -0.3
375,434 + -0.6

Or see this region's nucleotide sequence