Strain Fitness in Sinorhizobium meliloti 1021 around SMa0557

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0554 and SMa0557 are separated by 718 nucleotidesSMa0557 and SMa0558 are separated by 123 nucleotidesSMa0558 and SMa0559 are separated by 57 nucleotides SMa0554: SMa0554 - hypothetical protein, at 294,071 to 294,868 SMa0554 SMa0557: SMa0557 - LysR family transcriptional regulator, at 295,587 to 296,474 SMa0557 SMa0558: SMa0558 - hypothetical protein, at 296,598 to 296,990 SMa0558 SMa0559: SMa0559 - 4-carboxymuconolactone decarboxylase, at 297,048 to 297,791 SMa0559 Position (kb) 295 296 297Strain fitness (log2 ratio) -2 -1 0 1 2at 294.593 kb on - strand, within SMa0554at 294.627 kb on - strand, within SMa0554at 294.730 kb on - strand, within SMa0554at 294.774 kb on + strand, within SMa0554at 294.922 kb on - strandat 294.922 kb on - strandat 294.934 kb on + strandat 294.943 kb on + strandat 294.944 kb on - strandat 295.050 kb on - strandat 295.163 kb on + strandat 295.219 kb on + strandat 295.220 kb on - strandat 295.220 kb on - strandat 295.248 kb on - strandat 295.253 kb on - strandat 295.253 kb on - strandat 295.253 kb on - strandat 295.299 kb on + strandat 295.300 kb on - strandat 295.300 kb on - strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.302 kb on - strandat 295.302 kb on - strandat 295.303 kb on + strandat 295.303 kb on + strandat 295.304 kb on - strandat 295.304 kb on - strandat 295.360 kb on - strandat 295.360 kb on - strandat 295.368 kb on - strandat 295.492 kb on - strandat 295.543 kb on + strandat 295.543 kb on + strandat 295.543 kb on + strandat 295.544 kb on - strandat 295.544 kb on - strandat 295.651 kb on + strandat 295.652 kb on - strandat 295.652 kb on - strandat 295.689 kb on + strand, within SMa0557at 295.720 kb on + strand, within SMa0557at 295.748 kb on - strand, within SMa0557at 295.864 kb on + strand, within SMa0557at 295.864 kb on + strand, within SMa0557at 295.876 kb on + strand, within SMa0557at 295.877 kb on - strand, within SMa0557at 295.877 kb on - strand, within SMa0557at 295.877 kb on - strand, within SMa0557at 295.880 kb on + strand, within SMa0557at 295.881 kb on - strand, within SMa0557at 295.980 kb on - strand, within SMa0557at 295.980 kb on - strand, within SMa0557at 295.980 kb on - strand, within SMa0557at 295.980 kb on - strand, within SMa0557at 296.012 kb on + strand, within SMa0557at 296.012 kb on + strand, within SMa0557at 296.013 kb on - strand, within SMa0557at 296.013 kb on - strand, within SMa0557at 296.136 kb on + strand, within SMa0557at 296.136 kb on + strand, within SMa0557at 296.136 kb on + strand, within SMa0557at 296.137 kb on - strand, within SMa0557at 296.142 kb on - strand, within SMa0557at 296.142 kb on - strand, within SMa0557at 296.274 kb on + strand, within SMa0557at 296.274 kb on + strand, within SMa0557at 296.360 kb on + strand, within SMa0557at 296.539 kb on - strandat 296.540 kb on + strandat 296.541 kb on - strandat 296.803 kb on - strand, within SMa0558at 296.853 kb on + strand, within SMa0558at 296.853 kb on + strand, within SMa0558at 296.854 kb on - strand, within SMa0558at 296.854 kb on - strand, within SMa0558at 296.854 kb on - strand, within SMa0558at 296.901 kb on - strand, within SMa0558at 297.147 kb on + strand, within SMa0559at 297.147 kb on + strand, within SMa0559at 297.166 kb on - strand, within SMa0559at 297.264 kb on + strand, within SMa0559at 297.264 kb on + strand, within SMa0559at 297.264 kb on + strand, within SMa0559at 297.264 kb on + strand, within SMa0559at 297.264 kb on + strand, within SMa0559at 297.265 kb on - strand, within SMa0559at 297.267 kb on + strand, within SMa0559at 297.336 kb on + strand, within SMa0559at 297.337 kb on - strand, within SMa0559at 297.339 kb on + strand, within SMa0559

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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294,593 - SMa0554 0.65 +0.6
294,627 - SMa0554 0.70 +0.3
294,730 - SMa0554 0.83 -0.3
294,774 + SMa0554 0.88 -0.5
294,922 - +0.2
294,922 - +1.0
294,934 + -0.1
294,943 + -0.1
294,944 - +0.3
295,050 - +0.4
295,163 + +1.2
295,219 + +0.7
295,220 - +1.7
295,220 - +0.5
295,248 - -0.8
295,253 - +0.2
295,253 - +0.9
295,253 - +0.1
295,299 + -0.6
295,300 - -0.7
295,300 - -0.8
295,301 + -0.2
295,301 + -0.6
295,301 + +0.3
295,301 + +0.5
295,302 - -0.2
295,302 - +0.3
295,303 + +0.8
295,303 + -1.2
295,304 - +2.0
295,304 - -0.1
295,360 - +0.3
295,360 - -0.2
295,368 - +0.2
295,492 - -0.3
295,543 + -1.7
295,543 + +0.2
295,543 + +0.6
295,544 - -0.2
295,544 - +0.7
295,651 + +0.5
295,652 - +0.3
295,652 - -0.3
295,689 + SMa0557 0.11 +0.0
295,720 + SMa0557 0.15 +0.0
295,748 - SMa0557 0.18 -1.4
295,864 + SMa0557 0.31 -0.7
295,864 + SMa0557 0.31 +0.7
295,876 + SMa0557 0.33 +0.1
295,877 - SMa0557 0.33 -0.8
295,877 - SMa0557 0.33 -0.6
295,877 - SMa0557 0.33 -0.6
295,880 + SMa0557 0.33 +0.1
295,881 - SMa0557 0.33 -0.2
295,980 - SMa0557 0.44 +0.4
295,980 - SMa0557 0.44 -1.1
295,980 - SMa0557 0.44 -0.9
295,980 - SMa0557 0.44 -0.8
296,012 + SMa0557 0.48 -0.1
296,012 + SMa0557 0.48 +0.1
296,013 - SMa0557 0.48 +0.3
296,013 - SMa0557 0.48 +0.2
296,136 + SMa0557 0.62 -2.6
296,136 + SMa0557 0.62 -0.1
296,136 + SMa0557 0.62 +1.0
296,137 - SMa0557 0.62 -0.0
296,142 - SMa0557 0.62 -1.0
296,142 - SMa0557 0.62 -0.6
296,274 + SMa0557 0.77 -0.3
296,274 + SMa0557 0.77 +0.2
296,360 + SMa0557 0.87 +1.4
296,539 - -0.3
296,540 + +0.2
296,541 - -0.3
296,803 - SMa0558 0.52 -0.3
296,853 + SMa0558 0.65 -1.4
296,853 + SMa0558 0.65 +0.3
296,854 - SMa0558 0.65 +1.3
296,854 - SMa0558 0.65 +0.5
296,854 - SMa0558 0.65 +0.4
296,901 - SMa0558 0.77 +0.4
297,147 + SMa0559 0.13 +1.1
297,147 + SMa0559 0.13 +0.3
297,166 - SMa0559 0.16 -0.1
297,264 + SMa0559 0.29 -0.6
297,264 + SMa0559 0.29 -1.8
297,264 + SMa0559 0.29 -0.0
297,264 + SMa0559 0.29 -0.2
297,264 + SMa0559 0.29 +0.2
297,265 - SMa0559 0.29 -0.3
297,267 + SMa0559 0.29 -0.2
297,336 + SMa0559 0.39 +0.6
297,337 - SMa0559 0.39 -0.1
297,339 + SMa0559 0.39 -0.1

Or see this region's nucleotide sequence