Strain Fitness in Sinorhizobium meliloti 1021 around SMa0470

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0467 and SMa0469 are separated by 41 nucleotidesSMa0469 and SMa0470 are separated by 8 nucleotidesSMa0470 and SMa0471 are separated by 662 nucleotidesSMa0471 and SMa0473 overlap by 4 nucleotides SMa0467: SMa0467 - ABC transporter permease, at 253,863 to 254,879 SMa0467 SMa0469: SMa0469 - ABC transporter permease, at 254,921 to 255,718 SMa0469 SMa0470: SMa0470 - ABC transporter ATP-binding protein, at 255,727 to 257,562 SMa0470 SMa0471: SMa0471 - hypothetical protein, at 258,225 to 258,533 SMa0471 SMa0473: SMa0473 - hypothetical protein, at 258,530 to 258,823 SMa0473 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 254.832 kb on + strandat 254.833 kb on - strandat 254.834 kb on + strandat 254.835 kb on - strandat 254.959 kb on + strandat 254.959 kb on + strandat 254.960 kb on - strandat 254.960 kb on - strandat 255.082 kb on - strand, within SMa0469at 255.114 kb on - strand, within SMa0469at 255.114 kb on - strand, within SMa0469at 255.401 kb on + strand, within SMa0469at 255.401 kb on + strandat 255.402 kb on - strand, within SMa0469at 255.402 kb on - strand, within SMa0469at 255.402 kb on - strand, within SMa0469at 255.442 kb on + strand, within SMa0469at 255.491 kb on + strand, within SMa0469at 255.492 kb on - strand, within SMa0469at 255.492 kb on - strand, within SMa0469at 255.492 kb on - strand, within SMa0469at 255.495 kb on + strand, within SMa0469at 255.604 kb on + strand, within SMa0469at 255.604 kb on + strand, within SMa0469at 255.607 kb on + strand, within SMa0469at 255.607 kb on + strand, within SMa0469at 255.608 kb on - strand, within SMa0469at 255.880 kb on - strandat 256.014 kb on + strand, within SMa0470at 256.113 kb on - strand, within SMa0470at 256.128 kb on + strand, within SMa0470at 256.129 kb on - strand, within SMa0470at 256.290 kb on - strand, within SMa0470at 256.312 kb on - strand, within SMa0470at 256.312 kb on - strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.414 kb on + strand, within SMa0470at 256.477 kb on + strand, within SMa0470at 256.478 kb on - strand, within SMa0470at 256.478 kb on - strand, within SMa0470at 256.478 kb on - strand, within SMa0470at 256.513 kb on + strand, within SMa0470at 256.515 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.678 kb on - strand, within SMa0470at 256.850 kb on + strandat 256.850 kb on + strand, within SMa0470at 256.850 kb on + strand, within SMa0470at 256.856 kb on + strand, within SMa0470at 256.857 kb on - strand, within SMa0470at 256.863 kb on + strand, within SMa0470at 256.863 kb on + strand, within SMa0470at 257.029 kb on - strand, within SMa0470at 257.073 kb on - strand, within SMa0470at 257.085 kb on + strand, within SMa0470at 257.085 kb on + strand, within SMa0470at 257.303 kb on + strand, within SMa0470at 257.304 kb on - strand, within SMa0470at 257.304 kb on - strand, within SMa0470at 257.304 kb on - strand, within SMa0470at 257.380 kb on + strandat 257.380 kb on + strandat 257.380 kb on + strandat 257.381 kb on - strandat 257.392 kb on - strandat 257.392 kb on - strandat 257.435 kb on - strandat 257.435 kb on - strandat 257.435 kb on - strandat 257.435 kb on - strandat 257.443 kb on + strandat 257.444 kb on - strandat 257.444 kb on - strandat 257.444 kb on - strandat 257.490 kb on + strandat 257.506 kb on + strandat 257.507 kb on - strandat 257.507 kb on - strandat 257.507 kb on - strandat 257.508 kb on + strandat 257.508 kb on + strandat 257.509 kb on - strandat 257.509 kb on - strandat 257.707 kb on + strandat 257.708 kb on - strandat 257.708 kb on - strandat 257.775 kb on + strandat 257.868 kb on + strandat 257.868 kb on + strandat 257.871 kb on + strandat 257.871 kb on + strandat 257.871 kb on + strandat 257.871 kb on + strandat 257.872 kb on - strandat 257.903 kb on + strandat 257.903 kb on + strandat 257.904 kb on - strandat 257.904 kb on - strandat 257.948 kb on + strandat 257.949 kb on - strandat 258.007 kb on + strandat 258.103 kb on + strandat 258.104 kb on - strandat 258.104 kb on - strandat 258.108 kb on + strandat 258.108 kb on + strandat 258.109 kb on - strandat 258.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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254,832 + -1.1
254,833 - +1.7
254,834 + +0.5
254,835 - +0.1
254,959 + +0.5
254,959 + -0.2
254,960 - -0.8
254,960 - +0.6
255,082 - SMa0469 0.20 -0.1
255,114 - SMa0469 0.24 +0.3
255,114 - SMa0469 0.24 -0.8
255,401 + SMa0469 0.60 +0.8
255,401 + -0.3
255,402 - SMa0469 0.60 -0.5
255,402 - SMa0469 0.60 -0.6
255,402 - SMa0469 0.60 +0.4
255,442 + SMa0469 0.65 -0.3
255,491 + SMa0469 0.71 -0.3
255,492 - SMa0469 0.72 -1.6
255,492 - SMa0469 0.72 -0.3
255,492 - SMa0469 0.72 +2.2
255,495 + SMa0469 0.72 +0.1
255,604 + SMa0469 0.86 -0.5
255,604 + SMa0469 0.86 +1.6
255,607 + SMa0469 0.86 +1.5
255,607 + SMa0469 0.86 +0.3
255,608 - SMa0469 0.86 +1.0
255,880 - -0.0
256,014 + SMa0470 0.16 +0.6
256,113 - SMa0470 0.21 -0.5
256,128 + SMa0470 0.22 -0.7
256,129 - SMa0470 0.22 +0.8
256,290 - SMa0470 0.31 -0.4
256,312 - SMa0470 0.32 +0.9
256,312 - SMa0470 0.32 -1.2
256,405 + SMa0470 0.37 -0.8
256,405 + SMa0470 0.37 +0.8
256,405 + SMa0470 0.37 -0.8
256,405 + SMa0470 0.37 -0.4
256,405 + SMa0470 0.37 -1.9
256,406 - SMa0470 0.37 -0.4
256,406 - SMa0470 0.37 +0.1
256,406 - SMa0470 0.37 -0.1
256,406 - SMa0470 0.37 -1.0
256,406 - SMa0470 0.37 +0.3
256,406 - SMa0470 0.37 +1.5
256,414 + SMa0470 0.37 -0.4
256,477 + SMa0470 0.41 -0.3
256,478 - SMa0470 0.41 -0.1
256,478 - SMa0470 0.41 +0.0
256,478 - SMa0470 0.41 -0.4
256,513 + SMa0470 0.43 +0.7
256,515 + SMa0470 0.43 -0.2
256,677 + SMa0470 0.52 +0.3
256,677 + SMa0470 0.52 -1.8
256,677 + SMa0470 0.52 -0.4
256,677 + SMa0470 0.52 +0.5
256,677 + SMa0470 0.52 +1.1
256,678 - SMa0470 0.52 -0.1
256,850 + +1.5
256,850 + SMa0470 0.61 -0.0
256,850 + SMa0470 0.61 +0.3
256,856 + SMa0470 0.61 +0.1
256,857 - SMa0470 0.62 -0.2
256,863 + SMa0470 0.62 +0.8
256,863 + SMa0470 0.62 +0.7
257,029 - SMa0470 0.71 -0.2
257,073 - SMa0470 0.73 -0.4
257,085 + SMa0470 0.74 +0.0
257,085 + SMa0470 0.74 +0.1
257,303 + SMa0470 0.86 +0.8
257,304 - SMa0470 0.86 +0.2
257,304 - SMa0470 0.86 +1.3
257,304 - SMa0470 0.86 -0.0
257,380 + +0.1
257,380 + +0.9
257,380 + -0.8
257,381 - +0.7
257,392 - -0.5
257,392 - -0.5
257,435 - -0.4
257,435 - +0.4
257,435 - -1.0
257,435 - -0.4
257,443 + +1.7
257,444 - +0.3
257,444 - -1.3
257,444 - -0.1
257,490 + -0.0
257,506 + -1.0
257,507 - +1.0
257,507 - +0.0
257,507 - -0.3
257,508 + +0.5
257,508 + -0.3
257,509 - +1.6
257,509 - -0.4
257,707 + -1.2
257,708 - -0.4
257,708 - -1.3
257,775 + +0.1
257,868 + +0.2
257,868 + +0.2
257,871 + -0.2
257,871 + -0.5
257,871 + +1.1
257,871 + +0.2
257,872 - -0.8
257,903 + -0.5
257,903 + -0.1
257,904 - +0.4
257,904 - +0.1
257,948 + -0.5
257,949 - -0.5
258,007 + -0.7
258,103 + -0.1
258,104 - -0.9
258,104 - -1.3
258,108 + +0.7
258,108 + -0.5
258,109 - +0.9
258,109 - -0.2

Or see this region's nucleotide sequence