Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0293 and SMa0298 are separated by 372 nucleotides SMa0298 and SMa0299 are separated by 2 nucleotides SMa0299 and SMa0300 overlap by 4 nucleotides
SMa0293: SMa0293 - hypothetical protein, at 162,273 to 162,668
SMa0293
SMa0298: SMa0298 - ABC transporter ATP-binding protein, at 163,041 to 164,855
SMa0298
SMa0299: SMa0299 - ABC transporter permease, at 164,858 to 165,745
SMa0299
SMa0300: SMa0300 - ABC transporter permease, at 165,742 to 166,695
SMa0300
Position (kb) 163
164
165 Strain fitness (log2 ratio) -1
0
1
2 at 162.085 kb on + strand at 162.262 kb on - strand at 162.274 kb on + strand at 162.369 kb on - strand, within SMa0293 at 162.374 kb on + strand, within SMa0293 at 162.421 kb on + strand, within SMa0293 at 162.514 kb on - strand, within SMa0293 at 162.599 kb on + strand, within SMa0293 at 162.651 kb on + strand at 162.651 kb on + strand at 162.686 kb on + strand at 162.687 kb on - strand at 162.687 kb on - strand at 162.820 kb on - strand at 162.839 kb on - strand at 162.976 kb on + strand at 162.983 kb on + strand at 163.039 kb on + strand at 163.039 kb on + strand at 163.039 kb on + strand at 163.040 kb on - strand at 163.040 kb on - strand at 163.184 kb on - strand at 163.204 kb on - strand at 163.263 kb on + strand, within SMa0298 at 163.263 kb on + strand, within SMa0298 at 163.264 kb on - strand at 163.264 kb on - strand, within SMa0298 at 163.264 kb on - strand, within SMa0298 at 163.355 kb on + strand, within SMa0298 at 163.356 kb on - strand, within SMa0298 at 163.356 kb on - strand, within SMa0298 at 163.552 kb on + strand, within SMa0298 at 163.553 kb on - strand, within SMa0298 at 163.778 kb on + strand, within SMa0298 at 163.779 kb on - strand, within SMa0298 at 163.812 kb on + strand, within SMa0298 at 163.812 kb on + strand, within SMa0298 at 163.813 kb on - strand, within SMa0298 at 163.813 kb on - strand, within SMa0298 at 163.813 kb on - strand, within SMa0298 at 163.845 kb on - strand, within SMa0298 at 164.113 kb on + strand, within SMa0298 at 164.113 kb on + strand, within SMa0298 at 164.141 kb on + strand, within SMa0298 at 164.176 kb on + strand, within SMa0298 at 164.177 kb on - strand, within SMa0298 at 164.177 kb on - strand, within SMa0298 at 164.177 kb on - strand, within SMa0298 at 164.177 kb on - strand, within SMa0298 at 164.177 kb on - strand, within SMa0298 at 164.297 kb on + strand, within SMa0298 at 164.298 kb on - strand, within SMa0298 at 164.457 kb on + strand, within SMa0298 at 164.815 kb on + strand at 164.816 kb on - strand at 164.856 kb on - strand at 164.978 kb on + strand, within SMa0299 at 164.979 kb on - strand, within SMa0299 at 165.082 kb on - strand, within SMa0299 at 165.085 kb on + strand, within SMa0299 at 165.085 kb on + strand, within SMa0299 at 165.086 kb on - strand, within SMa0299 at 165.086 kb on - strand, within SMa0299 at 165.161 kb on - strand, within SMa0299 at 165.192 kb on + strand, within SMa0299 at 165.193 kb on - strand, within SMa0299 at 165.252 kb on + strand, within SMa0299 at 165.403 kb on + strand, within SMa0299 at 165.403 kb on + strand, within SMa0299 at 165.406 kb on - strand, within SMa0299 at 165.481 kb on + strand, within SMa0299 at 165.482 kb on - strand, within SMa0299 at 165.598 kb on - strand, within SMa0299 at 165.736 kb on + strand at 165.813 kb on - strand at 165.813 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 162,085 + -0.3 162,262 - +0.6 162,274 + -0.5 162,369 - SMa0293 0.24 -0.7 162,374 + SMa0293 0.26 -0.5 162,421 + SMa0293 0.37 +0.6 162,514 - SMa0293 0.61 +1.0 162,599 + SMa0293 0.82 -0.4 162,651 + +0.2 162,651 + -1.0 162,686 + +1.5 162,687 - -0.0 162,687 - +0.3 162,820 - -1.0 162,839 - +0.2 162,976 + -0.1 162,983 + +0.1 163,039 + -0.2 163,039 + +1.0 163,039 + -0.7 163,040 - -0.0 163,040 - +0.3 163,184 - -0.9 163,204 - +0.4 163,263 + SMa0298 0.12 -0.4 163,263 + SMa0298 0.12 -0.0 163,264 - +2.1 163,264 - SMa0298 0.12 +0.3 163,264 - SMa0298 0.12 +0.7 163,355 + SMa0298 0.17 +0.4 163,356 - SMa0298 0.17 -0.1 163,356 - SMa0298 0.17 -0.3 163,552 + SMa0298 0.28 +0.4 163,553 - SMa0298 0.28 +0.1 163,778 + SMa0298 0.41 -0.5 163,779 - SMa0298 0.41 +1.1 163,812 + SMa0298 0.42 -0.1 163,812 + SMa0298 0.42 +1.0 163,813 - SMa0298 0.43 +0.6 163,813 - SMa0298 0.43 -0.1 163,813 - SMa0298 0.43 -0.0 163,845 - SMa0298 0.44 +0.2 164,113 + SMa0298 0.59 -0.3 164,113 + SMa0298 0.59 +1.0 164,141 + SMa0298 0.61 +0.1 164,176 + SMa0298 0.63 -0.2 164,177 - SMa0298 0.63 -1.1 164,177 - SMa0298 0.63 -0.1 164,177 - SMa0298 0.63 +0.7 164,177 - SMa0298 0.63 -0.5 164,177 - SMa0298 0.63 +0.4 164,297 + SMa0298 0.69 -0.3 164,298 - SMa0298 0.69 +0.3 164,457 + SMa0298 0.78 +0.0 164,815 + -0.5 164,816 - +0.7 164,856 - +0.1 164,978 + SMa0299 0.14 -0.6 164,979 - SMa0299 0.14 +0.6 165,082 - SMa0299 0.25 -0.1 165,085 + SMa0299 0.26 +0.8 165,085 + SMa0299 0.26 -0.4 165,086 - SMa0299 0.26 +0.2 165,086 - SMa0299 0.26 -0.3 165,161 - SMa0299 0.34 +0.0 165,192 + SMa0299 0.38 +0.6 165,193 - SMa0299 0.38 -0.3 165,252 + SMa0299 0.44 -0.5 165,403 + SMa0299 0.61 +0.1 165,403 + SMa0299 0.61 +1.8 165,406 - SMa0299 0.62 +0.5 165,481 + SMa0299 0.70 +1.6 165,482 - SMa0299 0.70 -0.8 165,598 - SMa0299 0.83 -0.5 165,736 + +0.7 165,813 - +0.5 165,813 - -1.0
Or see this region's nucleotide sequence