Strain Fitness in Sinorhizobium meliloti 1021 around SMa0104

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0101 and SMa0104 are separated by 56 nucleotidesSMa0104 and SMa0105 are separated by 87 nucleotides SMa0101: SMa0101 - amidohydrolase, at 51,262 to 52,887 SMa0101 SMa0104: SMa0104 - ABC transporter substrate-binding protein, at 52,944 to 54,536 SMa0104 SMa0105: SMa0105 - ABC transporter permease, at 54,624 to 55,559 SMa0105 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 51.992 kb on - strand, within SMa0101at 52.193 kb on - strand, within SMa0101at 52.193 kb on - strand, within SMa0101at 52.195 kb on - strand, within SMa0101at 52.336 kb on + strand, within SMa0101at 52.441 kb on - strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.493 kb on + strand, within SMa0101at 52.494 kb on - strand, within SMa0101at 52.494 kb on - strand, within SMa0101at 52.494 kb on - strand, within SMa0101at 52.702 kb on + strand, within SMa0101at 52.721 kb on - strand, within SMa0101at 53.049 kb on + strandat 53.136 kb on + strand, within SMa0104at 53.137 kb on - strand, within SMa0104at 53.137 kb on - strand, within SMa0104at 53.220 kb on + strand, within SMa0104at 53.220 kb on + strand, within SMa0104at 53.220 kb on + strand, within SMa0104at 53.221 kb on - strand, within SMa0104at 53.221 kb on - strand, within SMa0104at 53.283 kb on + strand, within SMa0104at 53.283 kb on + strand, within SMa0104at 53.284 kb on - strand, within SMa0104at 53.284 kb on - strand, within SMa0104at 53.289 kb on + strand, within SMa0104at 53.289 kb on + strand, within SMa0104at 53.290 kb on - strand, within SMa0104at 53.290 kb on - strand, within SMa0104at 53.364 kb on + strand, within SMa0104at 53.365 kb on - strand, within SMa0104at 53.365 kb on - strand, within SMa0104at 53.433 kb on + strand, within SMa0104at 53.433 kb on + strand, within SMa0104at 53.433 kb on + strand, within SMa0104at 53.434 kb on - strand, within SMa0104at 53.434 kb on - strand, within SMa0104at 53.488 kb on - strand, within SMa0104at 53.488 kb on - strand, within SMa0104at 53.604 kb on + strand, within SMa0104at 53.604 kb on + strand, within SMa0104at 53.604 kb on + strand, within SMa0104at 53.607 kb on + strand, within SMa0104at 53.727 kb on + strand, within SMa0104at 53.727 kb on + strand, within SMa0104at 53.728 kb on - strand, within SMa0104at 53.736 kb on + strand, within SMa0104at 53.737 kb on - strand, within SMa0104at 53.787 kb on + strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.798 kb on + strand, within SMa0104at 53.977 kb on - strand, within SMa0104at 54.240 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.309 kb on + strand, within SMa0104at 54.412 kb on - strandat 54.412 kb on - strandat 54.432 kb on + strandat 54.535 kb on - strandat 54.556 kb on + strandat 54.598 kb on - strandat 54.662 kb on - strandat 54.690 kb on - strandat 54.690 kb on - strandat 54.692 kb on - strandat 54.692 kb on - strandat 54.834 kb on + strand, within SMa0105at 54.834 kb on + strand, within SMa0105at 54.834 kb on + strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 55.019 kb on + strand, within SMa0105at 55.089 kb on + strand, within SMa0105at 55.089 kb on + strand, within SMa0105at 55.089 kb on + strand, within SMa0105at 55.090 kb on - strand, within SMa0105at 55.090 kb on - strand, within SMa0105at 55.090 kb on - strand, within SMa0105at 55.524 kb on + strandat 55.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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51,992 - SMa0101 0.45 -0.2
52,193 - SMa0101 0.57 +1.1
52,193 - SMa0101 0.57 -0.2
52,195 - SMa0101 0.57 +1.5
52,336 + SMa0101 0.66 +0.7
52,441 - SMa0101 0.73 -1.7
52,489 + SMa0101 0.75 -0.9
52,489 + SMa0101 0.75 +0.5
52,489 + SMa0101 0.75 -0.3
52,489 + SMa0101 0.75 -0.2
52,489 + SMa0101 0.75 -0.6
52,490 - SMa0101 0.76 +0.0
52,490 - SMa0101 0.76 -0.4
52,490 - SMa0101 0.76 -0.2
52,490 - SMa0101 0.76 -0.3
52,490 - SMa0101 0.76 -0.7
52,490 - SMa0101 0.76 +0.1
52,490 - SMa0101 0.76 +0.8
52,493 + SMa0101 0.76 -0.1
52,494 - SMa0101 0.76 -0.7
52,494 - SMa0101 0.76 +0.4
52,494 - SMa0101 0.76 -0.0
52,702 + SMa0101 0.89 -0.0
52,721 - SMa0101 0.90 +0.7
53,049 + +1.0
53,136 + SMa0104 0.12 -0.2
53,137 - SMa0104 0.12 +0.5
53,137 - SMa0104 0.12 -0.2
53,220 + SMa0104 0.17 +0.2
53,220 + SMa0104 0.17 +0.5
53,220 + SMa0104 0.17 +0.9
53,221 - SMa0104 0.17 +0.2
53,221 - SMa0104 0.17 +0.0
53,283 + SMa0104 0.21 +0.3
53,283 + SMa0104 0.21 +1.4
53,284 - SMa0104 0.21 +0.5
53,284 - SMa0104 0.21 -0.2
53,289 + SMa0104 0.22 -0.0
53,289 + SMa0104 0.22 +0.6
53,290 - SMa0104 0.22 -0.8
53,290 - SMa0104 0.22 +0.8
53,364 + SMa0104 0.26 +0.3
53,365 - SMa0104 0.26 -0.3
53,365 - SMa0104 0.26 -0.0
53,433 + SMa0104 0.31 -0.1
53,433 + SMa0104 0.31 -0.2
53,433 + SMa0104 0.31 +0.7
53,434 - SMa0104 0.31 +1.2
53,434 - SMa0104 0.31 -0.3
53,488 - SMa0104 0.34 -0.9
53,488 - SMa0104 0.34 +0.9
53,604 + SMa0104 0.41 +0.5
53,604 + SMa0104 0.41 +0.9
53,604 + SMa0104 0.41 +0.3
53,607 + SMa0104 0.42 +0.1
53,727 + SMa0104 0.49 -0.0
53,727 + SMa0104 0.49 -0.5
53,728 - SMa0104 0.49 -0.7
53,736 + SMa0104 0.50 +0.6
53,737 - SMa0104 0.50 -1.0
53,787 + SMa0104 0.53 -0.5
53,788 - SMa0104 0.53 -0.7
53,788 - SMa0104 0.53 +0.1
53,788 - SMa0104 0.53 +0.2
53,798 + SMa0104 0.54 -0.1
53,977 - SMa0104 0.65 -0.4
54,240 + SMa0104 0.81 -0.6
54,282 + SMa0104 0.84 +0.2
54,282 + SMa0104 0.84 -0.0
54,282 + SMa0104 0.84 -0.1
54,282 + SMa0104 0.84 +0.1
54,283 - SMa0104 0.84 -1.0
54,283 - SMa0104 0.84 +0.3
54,283 - SMa0104 0.84 +0.6
54,283 - SMa0104 0.84 +0.3
54,309 + SMa0104 0.86 +1.4
54,412 - -0.3
54,412 - -0.7
54,432 + -0.7
54,535 - -1.5
54,556 + -0.8
54,598 - +0.6
54,662 - -1.6
54,690 - -0.4
54,690 - -0.9
54,692 - -0.4
54,692 - -0.1
54,834 + SMa0105 0.22 -0.8
54,834 + SMa0105 0.22 -0.1
54,834 + SMa0105 0.22 -1.8
54,835 - SMa0105 0.23 -0.1
54,835 - SMa0105 0.23 +0.3
54,835 - SMa0105 0.23 +0.2
54,835 - SMa0105 0.23 -0.2
55,019 + SMa0105 0.42 -0.5
55,089 + SMa0105 0.50 -0.8
55,089 + SMa0105 0.50 +1.3
55,089 + SMa0105 0.50 -0.8
55,090 - SMa0105 0.50 -0.6
55,090 - SMa0105 0.50 -0.3
55,090 - SMa0105 0.50 -0.1
55,524 + +0.3
55,525 - +1.9

Or see this region's nucleotide sequence