Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21653

Experiment: Lactitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21652 and SM_b21653 are separated by 93 nucleotidesSM_b21653 and SM_b21654 overlap by 4 nucleotidesSM_b21654 and SM_b21655 are separated by 5 nucleotides SM_b21652: SM_b21652 - ABC transporter for Lactose, periplasmic substrate-binding component (from data), at 1 to 1,275 _b21652 SM_b21653: SM_b21653 - ABC transporter for Lactose, permease component 1 (from data), at 1,369 to 2,265 _b21653 SM_b21654: SM_b21654 - ABC transporter for Lactose, permease component 2 (from data), at 2,262 to 3,080 _b21654 SM_b21655: SM_b21655 - Beta-galactosidase (EC 3.2.1.23) (from data), at 3,086 to 5,353 _b21655 Position (kb) 1 2 3Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 0.377 kb on - strand, within SM_b21652at 0.412 kb on + strand, within SM_b21652at 0.413 kb on - strand, within SM_b21652at 0.413 kb on - strand, within SM_b21652at 0.448 kb on + strand, within SM_b21652at 0.449 kb on - strand, within SM_b21652at 0.720 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strandat 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.854 kb on + strand, within SM_b21652at 0.854 kb on + strand, within SM_b21652at 0.855 kb on - strand, within SM_b21652at 0.922 kb on + strand, within SM_b21652at 0.923 kb on - strand, within SM_b21652at 0.923 kb on - strand, within SM_b21652at 0.926 kb on + strand, within SM_b21652at 0.927 kb on - strand, within SM_b21652at 1.067 kb on - strand, within SM_b21652at 1.067 kb on - strand, within SM_b21652at 1.067 kb on - strand, within SM_b21652at 1.402 kb on + strandat 1.402 kb on + strandat 1.403 kb on - strandat 1.739 kb on - strand, within SM_b21653at 1.892 kb on - strand, within SM_b21653at 1.906 kb on + strand, within SM_b21653at 1.907 kb on - strand, within SM_b21653at 1.907 kb on - strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.078 kb on - strand, within SM_b21653at 2.078 kb on - strand, within SM_b21653at 2.079 kb on + strand, within SM_b21653at 2.080 kb on - strand, within SM_b21653at 2.134 kb on + strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.140 kb on + strand, within SM_b21653at 2.141 kb on - strand, within SM_b21653at 2.195 kb on - strandat 2.195 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.721 kb on + strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.800 kb on + strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.815 kb on - strand, within SM_b21654at 2.838 kb on + strand, within SM_b21654at 2.839 kb on - strand, within SM_b21654at 2.883 kb on + strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.961 kb on + strand, within SM_b21654at 2.962 kb on - strand, within SM_b21654at 2.964 kb on + strand, within SM_b21654at 3.033 kb on + strandat 3.079 kb on - strandat 3.079 kb on - strandat 3.101 kb on - strandat 3.218 kb on + strandat 3.236 kb on + strandat 3.236 kb on + strandat 3.254 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
remove
377 - SM_b21652 0.29 -1.8
412 + SM_b21652 0.32 -1.2
413 - SM_b21652 0.32 -2.8
413 - SM_b21652 0.32 -2.7
448 + SM_b21652 0.35 -1.4
449 - SM_b21652 0.35 -2.2
720 + SM_b21652 0.56 +0.4
724 + SM_b21652 0.57 +0.8
724 + SM_b21652 0.57 -1.2
724 + SM_b21652 0.57 -1.1
724 + SM_b21652 0.57 -0.8
725 - SM_b21652 0.57 +2.5
725 - SM_b21652 0.57 -0.3
725 - SM_b21652 0.57 -1.5
725 - +0.9
725 - SM_b21652 0.57 -1.7
725 - SM_b21652 0.57 -4.3
854 + SM_b21652 0.67 -0.2
854 + SM_b21652 0.67 -2.3
855 - SM_b21652 0.67 -1.3
922 + SM_b21652 0.72 -0.1
923 - SM_b21652 0.72 -4.4
923 - SM_b21652 0.72 -2.6
926 + SM_b21652 0.73 +1.0
927 - SM_b21652 0.73 -0.9
1,067 - SM_b21652 0.84 -2.8
1,067 - SM_b21652 0.84 -2.0
1,067 - SM_b21652 0.84 -2.7
1,402 + +0.3
1,402 + -0.6
1,403 - -1.7
1,739 - SM_b21653 0.41 -2.4
1,892 - SM_b21653 0.58 -1.9
1,906 + SM_b21653 0.60 -0.3
1,907 - SM_b21653 0.60 -1.6
1,907 - SM_b21653 0.60 -2.0
2,077 + SM_b21653 0.79 -1.6
2,077 + SM_b21653 0.79 -1.8
2,077 + SM_b21653 0.79 -0.8
2,078 - SM_b21653 0.79 -3.7
2,078 - SM_b21653 0.79 -1.3
2,079 + SM_b21653 0.79 +1.1
2,080 - SM_b21653 0.79 -2.4
2,134 + SM_b21653 0.85 -0.1
2,135 - SM_b21653 0.85 -1.4
2,135 - SM_b21653 0.85 -0.3
2,140 + SM_b21653 0.86 -2.3
2,141 - SM_b21653 0.86 -2.5
2,195 - -1.4
2,195 - -1.2
2,302 - -3.5
2,302 - -1.0
2,302 - -1.2
2,721 + SM_b21654 0.56 -0.9
2,722 - SM_b21654 0.56 -2.4
2,722 - SM_b21654 0.56 -1.1
2,800 + SM_b21654 0.66 -0.5
2,801 - SM_b21654 0.66 -3.2
2,801 - SM_b21654 0.66 -1.3
2,814 + SM_b21654 0.67 +0.9
2,814 + SM_b21654 0.67 -1.1
2,815 - SM_b21654 0.68 -2.0
2,838 + SM_b21654 0.70 -1.2
2,839 - SM_b21654 0.70 -0.5
2,883 + SM_b21654 0.76 +0.4
2,884 - SM_b21654 0.76 -1.5
2,884 - SM_b21654 0.76 -1.7
2,884 - SM_b21654 0.76 -2.2
2,961 + SM_b21654 0.85 -1.4
2,962 - SM_b21654 0.85 +0.6
2,964 + SM_b21654 0.86 -1.2
3,033 + -0.8
3,079 - -1.9
3,079 - -2.5
3,101 - -0.1
3,218 + -0.3
3,236 + -1.7
3,236 + -2.9
3,254 + -3.2

Or see this region's nucleotide sequence