Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21650

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21649 and SM_b21650 are separated by 70 nucleotidesSM_b21650 and SM_b21651 overlap by 18 nucleotides SM_b21649: SM_b21649 - AraC family transcriptional regulator, at 1,680,394 to 1,681,335 _b21649 SM_b21650: SM_b21650 - LacI family transcriptional regulator, at 1,681,406 to 1,682,485 _b21650 SM_b21651: SM_b21651 - plasmid stability protein, at 1,682,468 to 1,682,881 _b21651 Position (kb) 1681 1682 1683Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 1680.495 kb on + strand, within SM_b21649at 1680.496 kb on - strand, within SM_b21649at 1680.496 kb on - strand, within SM_b21649at 1680.527 kb on - strand, within SM_b21649at 1680.608 kb on - strand, within SM_b21649at 1680.676 kb on + strand, within SM_b21649at 1680.676 kb on + strand, within SM_b21649at 1680.783 kb on - strand, within SM_b21649at 1680.877 kb on + strand, within SM_b21649at 1680.878 kb on - strand, within SM_b21649at 1680.878 kb on - strand, within SM_b21649at 1680.878 kb on - strand, within SM_b21649at 1680.898 kb on + strand, within SM_b21649at 1680.898 kb on + strand, within SM_b21649at 1680.899 kb on - strand, within SM_b21649at 1681.193 kb on - strand, within SM_b21649at 1681.258 kb on + strandat 1681.258 kb on + strandat 1681.259 kb on - strandat 1681.259 kb on - strandat 1681.259 kb on - strandat 1681.443 kb on + strandat 1681.475 kb on + strandat 1681.476 kb on - strandat 1681.492 kb on + strandat 1681.493 kb on - strandat 1681.493 kb on - strandat 1681.493 kb on - strandat 1681.544 kb on + strand, within SM_b21650at 1681.545 kb on - strand, within SM_b21650at 1681.655 kb on + strand, within SM_b21650at 1681.655 kb on + strand, within SM_b21650at 1681.655 kb on + strand, within SM_b21650at 1681.656 kb on - strand, within SM_b21650at 1681.793 kb on + strand, within SM_b21650at 1681.851 kb on - strand, within SM_b21650at 1681.851 kb on - strand, within SM_b21650at 1681.979 kb on + strand, within SM_b21650at 1681.980 kb on - strand, within SM_b21650at 1682.021 kb on + strand, within SM_b21650at 1682.022 kb on - strand, within SM_b21650at 1682.022 kb on - strand, within SM_b21650at 1682.024 kb on - strand, within SM_b21650at 1682.052 kb on - strand, within SM_b21650at 1682.100 kb on - strand, within SM_b21650at 1682.100 kb on - strand, within SM_b21650at 1682.168 kb on - strand, within SM_b21650at 1682.168 kb on - strand, within SM_b21650at 1682.168 kb on - strand, within SM_b21650at 1682.224 kb on + strand, within SM_b21650at 1682.559 kb on - strand, within SM_b21651at 1682.632 kb on - strand, within SM_b21651at 1682.661 kb on + strand, within SM_b21651at 1682.661 kb on + strand, within SM_b21651at 1682.661 kb on + strand, within SM_b21651at 1682.662 kb on - strand, within SM_b21651at 1682.662 kb on - strand, within SM_b21651at 1682.662 kb on - strand, within SM_b21651at 1682.663 kb on + strand, within SM_b21651at 1682.663 kb on + strand, within SM_b21651at 1682.752 kb on - strand, within SM_b21651at 1682.871 kb on - strandat 1683.011 kb on + strandat 1683.012 kb on - strandat 1683.012 kb on - strandat 1683.013 kb on + strandat 1683.014 kb on - strandat 1683.150 kb on + strandat 1683.152 kb on + strandat 1683.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,680,495 + SM_b21649 0.11 -0.9
1,680,496 - SM_b21649 0.11 +4.6
1,680,496 - SM_b21649 0.11 +4.7
1,680,527 - SM_b21649 0.14 +4.6
1,680,608 - SM_b21649 0.23 +3.2
1,680,676 + SM_b21649 0.30 -2.0
1,680,676 + SM_b21649 0.30 -2.4
1,680,783 - SM_b21649 0.41 +1.1
1,680,877 + SM_b21649 0.51 -2.8
1,680,878 - SM_b21649 0.51 +0.4
1,680,878 - SM_b21649 0.51 -0.2
1,680,878 - SM_b21649 0.51 +0.9
1,680,898 + SM_b21649 0.54 -0.1
1,680,898 + SM_b21649 0.54 -1.8
1,680,899 - SM_b21649 0.54 -1.1
1,681,193 - SM_b21649 0.85 -1.4
1,681,258 + -2.0
1,681,258 + -3.0
1,681,259 - +2.0
1,681,259 - +2.5
1,681,259 - +2.7
1,681,443 + -2.8
1,681,475 + +10.7
1,681,476 - +9.7
1,681,492 + +9.0
1,681,493 - +9.3
1,681,493 - +10.3
1,681,493 - +9.8
1,681,544 + SM_b21650 0.13 +9.2
1,681,545 - SM_b21650 0.13 +8.9
1,681,655 + SM_b21650 0.23 +9.3
1,681,655 + SM_b21650 0.23 +8.9
1,681,655 + SM_b21650 0.23 +9.6
1,681,656 - SM_b21650 0.23 +9.3
1,681,793 + SM_b21650 0.36 +9.1
1,681,851 - SM_b21650 0.41 +9.2
1,681,851 - SM_b21650 0.41 +9.3
1,681,979 + SM_b21650 0.53 +9.0
1,681,980 - SM_b21650 0.53 +9.3
1,682,021 + SM_b21650 0.57 +9.6
1,682,022 - SM_b21650 0.57 +9.6
1,682,022 - SM_b21650 0.57 +8.8
1,682,024 - SM_b21650 0.57 +8.8
1,682,052 - SM_b21650 0.60 +9.1
1,682,100 - SM_b21650 0.64 +9.1
1,682,100 - SM_b21650 0.64 +9.0
1,682,168 - SM_b21650 0.71 +8.7
1,682,168 - SM_b21650 0.71 +9.2
1,682,168 - SM_b21650 0.71 +8.7
1,682,224 + SM_b21650 0.76 +9.9
1,682,559 - SM_b21651 0.22 -0.8
1,682,632 - SM_b21651 0.40 -1.0
1,682,661 + SM_b21651 0.47 -0.7
1,682,661 + SM_b21651 0.47 -1.3
1,682,661 + SM_b21651 0.47 -1.2
1,682,662 - SM_b21651 0.47 +2.5
1,682,662 - SM_b21651 0.47 +0.2
1,682,662 - SM_b21651 0.47 +1.7
1,682,663 + SM_b21651 0.47 +0.4
1,682,663 + SM_b21651 0.47 -0.2
1,682,752 - SM_b21651 0.69 +0.7
1,682,871 - -0.0
1,683,011 + -0.7
1,683,012 - +1.5
1,683,012 - -0.2
1,683,013 + -0.7
1,683,014 - +1.0
1,683,150 + +0.1
1,683,152 + +0.0
1,683,172 - -0.0

Or see this region's nucleotide sequence