Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21647

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21646 and SM_b21647 are separated by 117 nucleotidesSM_b21647 and SM_b21648 are separated by 288 nucleotides SM_b21646: SM_b21646 - ABC transporter for D-Raffinose, permease component 2 (from data), at 1,675,225 to 1,676,238 _b21646 SM_b21647: SM_b21647 - ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data), at 1,676,356 to 1,678,437 _b21647 SM_b21648: SM_b21648 - Alpha-galactosidase (EC 3.2.1.22) (from data), at 1,678,726 to 1,680,198 _b21648 Position (kb) 1676 1677 1678 1679Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1675.439 kb on + strand, within SM_b21646at 1675.440 kb on - strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.550 kb on + strand, within SM_b21646at 1675.596 kb on + strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.601 kb on + strand, within SM_b21646at 1675.750 kb on - strand, within SM_b21646at 1675.750 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.804 kb on + strand, within SM_b21646at 1675.835 kb on + strand, within SM_b21646at 1675.897 kb on + strand, within SM_b21646at 1675.898 kb on - strand, within SM_b21646at 1675.962 kb on - strand, within SM_b21646at 1675.964 kb on + strand, within SM_b21646at 1676.037 kb on + strand, within SM_b21646at 1676.060 kb on + strand, within SM_b21646at 1676.061 kb on - strand, within SM_b21646at 1676.138 kb on + strandat 1676.138 kb on + strandat 1676.139 kb on - strandat 1676.213 kb on - strandat 1676.415 kb on - strandat 1676.757 kb on + strand, within SM_b21647at 1676.758 kb on - strand, within SM_b21647at 1676.758 kb on - strand, within SM_b21647at 1676.823 kb on - strand, within SM_b21647at 1676.931 kb on - strand, within SM_b21647at 1677.071 kb on + strand, within SM_b21647at 1677.072 kb on - strand, within SM_b21647at 1677.074 kb on + strand, within SM_b21647at 1677.074 kb on + strand, within SM_b21647at 1677.075 kb on - strand, within SM_b21647at 1677.075 kb on - strand, within SM_b21647at 1677.075 kb on - strand, within SM_b21647at 1677.096 kb on - strand, within SM_b21647at 1677.096 kb on - strand, within SM_b21647at 1677.129 kb on - strand, within SM_b21647at 1677.455 kb on + strand, within SM_b21647at 1677.455 kb on + strand, within SM_b21647at 1677.456 kb on - strand, within SM_b21647at 1677.512 kb on + strand, within SM_b21647at 1677.513 kb on - strand, within SM_b21647at 1677.513 kb on - strand, within SM_b21647at 1677.591 kb on + strand, within SM_b21647at 1677.591 kb on + strand, within SM_b21647at 1677.591 kb on + strand, within SM_b21647at 1677.591 kb on + strand, within SM_b21647at 1677.591 kb on + strand, within SM_b21647at 1677.591 kb on + strand, within SM_b21647at 1677.592 kb on - strand, within SM_b21647at 1677.592 kb on - strand, within SM_b21647at 1677.592 kb on - strand, within SM_b21647at 1677.592 kb on - strand, within SM_b21647at 1677.592 kb on - strand, within SM_b21647at 1677.593 kb on + strand, within SM_b21647at 1677.593 kb on + strand, within SM_b21647at 1677.593 kb on + strand, within SM_b21647at 1677.593 kb on + strand, within SM_b21647at 1677.625 kb on - strand, within SM_b21647at 1677.626 kb on + strand, within SM_b21647at 1677.626 kb on + strand, within SM_b21647at 1677.627 kb on - strand, within SM_b21647at 1677.627 kb on - strand, within SM_b21647at 1677.641 kb on + strand, within SM_b21647at 1677.641 kb on + strand, within SM_b21647at 1677.642 kb on - strand, within SM_b21647at 1677.690 kb on + strand, within SM_b21647at 1677.753 kb on + strand, within SM_b21647at 1677.755 kb on + strand, within SM_b21647at 1677.756 kb on - strand, within SM_b21647at 1677.756 kb on - strand, within SM_b21647at 1677.855 kb on - strand, within SM_b21647at 1678.082 kb on + strand, within SM_b21647at 1678.133 kb on + strand, within SM_b21647at 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.305 kb on - strandat 1678.390 kb on + strandat 1678.390 kb on + strandat 1678.390 kb on + strandat 1678.391 kb on - strandat 1678.417 kb on - strandat 1678.417 kb on - strandat 1678.654 kb on + strandat 1679.196 kb on - strand, within SM_b21648at 1679.427 kb on - strand, within SM_b21648

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,675,439 + SM_b21646 0.21 -0.6
1,675,440 - SM_b21646 0.21 +1.0
1,675,460 + SM_b21646 0.23 -0.3
1,675,460 + SM_b21646 0.23 -0.6
1,675,460 + SM_b21646 0.23 -0.8
1,675,461 - SM_b21646 0.23 -0.5
1,675,461 - SM_b21646 0.23 -2.1
1,675,461 - SM_b21646 0.23 -1.7
1,675,461 - SM_b21646 0.23 +1.8
1,675,550 + SM_b21646 0.32 -1.2
1,675,596 + SM_b21646 0.37 -0.8
1,675,597 - SM_b21646 0.37 -0.8
1,675,597 - SM_b21646 0.37 +0.2
1,675,597 - SM_b21646 0.37 -1.2
1,675,601 + SM_b21646 0.37 -1.4
1,675,750 - SM_b21646 0.52 -2.5
1,675,750 - SM_b21646 0.52 -2.2
1,675,752 - SM_b21646 0.52 -2.1
1,675,752 - SM_b21646 0.52 -3.0
1,675,752 - SM_b21646 0.52 -1.0
1,675,752 - SM_b21646 0.52 -2.0
1,675,804 + SM_b21646 0.57 -2.1
1,675,835 + SM_b21646 0.60 -1.1
1,675,897 + SM_b21646 0.66 -1.5
1,675,898 - SM_b21646 0.66 -1.1
1,675,962 - SM_b21646 0.73 -1.8
1,675,964 + SM_b21646 0.73 -0.9
1,676,037 + SM_b21646 0.80 -2.3
1,676,060 + SM_b21646 0.82 -1.7
1,676,061 - SM_b21646 0.82 -0.9
1,676,138 + -2.9
1,676,138 + -0.8
1,676,139 - -1.4
1,676,213 - -1.3
1,676,415 - -2.2
1,676,757 + SM_b21647 0.19 -1.6
1,676,758 - SM_b21647 0.19 -1.6
1,676,758 - SM_b21647 0.19 -2.1
1,676,823 - SM_b21647 0.22 -1.7
1,676,931 - SM_b21647 0.28 -0.9
1,677,071 + SM_b21647 0.34 -0.5
1,677,072 - SM_b21647 0.34 -2.5
1,677,074 + SM_b21647 0.34 -0.6
1,677,074 + SM_b21647 0.34 -1.1
1,677,075 - SM_b21647 0.35 +0.6
1,677,075 - SM_b21647 0.35 -1.8
1,677,075 - SM_b21647 0.35 -1.8
1,677,096 - SM_b21647 0.36 -1.7
1,677,096 - SM_b21647 0.36 -0.1
1,677,129 - SM_b21647 0.37 +0.1
1,677,455 + SM_b21647 0.53 -1.1
1,677,455 + SM_b21647 0.53 -1.5
1,677,456 - SM_b21647 0.53 -0.9
1,677,512 + SM_b21647 0.56 -2.2
1,677,513 - SM_b21647 0.56 -1.3
1,677,513 - SM_b21647 0.56 -2.0
1,677,591 + SM_b21647 0.59 -1.2
1,677,591 + SM_b21647 0.59 -1.2
1,677,591 + SM_b21647 0.59 -2.7
1,677,591 + SM_b21647 0.59 -0.8
1,677,591 + SM_b21647 0.59 -0.5
1,677,591 + SM_b21647 0.59 -2.6
1,677,592 - SM_b21647 0.59 -1.2
1,677,592 - SM_b21647 0.59 -1.9
1,677,592 - SM_b21647 0.59 -1.1
1,677,592 - SM_b21647 0.59 +0.2
1,677,592 - SM_b21647 0.59 +2.5
1,677,593 + SM_b21647 0.59 -0.8
1,677,593 + SM_b21647 0.59 -1.7
1,677,593 + SM_b21647 0.59 -0.1
1,677,593 + SM_b21647 0.59 -1.3
1,677,625 - SM_b21647 0.61 -0.8
1,677,626 + SM_b21647 0.61 +1.5
1,677,626 + SM_b21647 0.61 -0.6
1,677,627 - SM_b21647 0.61 -1.2
1,677,627 - SM_b21647 0.61 -1.0
1,677,641 + SM_b21647 0.62 -1.9
1,677,641 + SM_b21647 0.62 -2.2
1,677,642 - SM_b21647 0.62 +0.9
1,677,690 + SM_b21647 0.64 +1.5
1,677,753 + SM_b21647 0.67 -2.3
1,677,755 + SM_b21647 0.67 +0.2
1,677,756 - SM_b21647 0.67 -2.3
1,677,756 - SM_b21647 0.67 -1.6
1,677,855 - SM_b21647 0.72 -0.7
1,678,082 + SM_b21647 0.83 +0.7
1,678,133 + SM_b21647 0.85 -1.4
1,678,304 + +0.2
1,678,304 + -0.8
1,678,304 + -1.1
1,678,304 + -2.1
1,678,304 + +0.9
1,678,304 + -1.6
1,678,304 + -1.8
1,678,304 + -1.8
1,678,305 - -1.3
1,678,390 + -1.9
1,678,390 + -2.0
1,678,390 + -1.7
1,678,391 - -3.1
1,678,417 - -1.9
1,678,417 - -0.7
1,678,654 + -1.7
1,679,196 - SM_b21648 0.32 +1.0
1,679,427 - SM_b21648 0.48 -0.5

Or see this region's nucleotide sequence