Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21646 and SM_b21647 are separated by 117 nucleotides SM_b21647 and SM_b21648 are separated by 288 nucleotides
SM_b21646: SM_b21646 - ABC transporter for D-Raffinose, permease component 2 (from data) , at 1,675,225 to 1,676,238
_b21646
SM_b21647: SM_b21647 - ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data) , at 1,676,356 to 1,678,437
_b21647
SM_b21648: SM_b21648 - Alpha-galactosidase (EC 3.2.1.22) (from data) , at 1,678,726 to 1,680,198
_b21648
Position (kb)
1676
1677
1678
1679 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1675.439 kb on + strand, within SM_b21646 at 1675.440 kb on - strand, within SM_b21646 at 1675.460 kb on + strand, within SM_b21646 at 1675.460 kb on + strand, within SM_b21646 at 1675.460 kb on + strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.461 kb on - strand, within SM_b21646 at 1675.550 kb on + strand, within SM_b21646 at 1675.596 kb on + strand, within SM_b21646 at 1675.597 kb on - strand, within SM_b21646 at 1675.597 kb on - strand, within SM_b21646 at 1675.597 kb on - strand, within SM_b21646 at 1675.601 kb on + strand, within SM_b21646 at 1675.750 kb on - strand, within SM_b21646 at 1675.750 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.752 kb on - strand, within SM_b21646 at 1675.804 kb on + strand, within SM_b21646 at 1675.835 kb on + strand, within SM_b21646 at 1675.897 kb on + strand, within SM_b21646 at 1675.898 kb on - strand, within SM_b21646 at 1675.962 kb on - strand, within SM_b21646 at 1675.964 kb on + strand, within SM_b21646 at 1676.037 kb on + strand, within SM_b21646 at 1676.060 kb on + strand, within SM_b21646 at 1676.061 kb on - strand, within SM_b21646 at 1676.138 kb on + strand at 1676.138 kb on + strand at 1676.139 kb on - strand at 1676.213 kb on - strand at 1676.415 kb on - strand at 1676.757 kb on + strand, within SM_b21647 at 1676.758 kb on - strand, within SM_b21647 at 1676.758 kb on - strand, within SM_b21647 at 1676.823 kb on - strand, within SM_b21647 at 1676.931 kb on - strand, within SM_b21647 at 1677.071 kb on + strand, within SM_b21647 at 1677.072 kb on - strand, within SM_b21647 at 1677.074 kb on + strand, within SM_b21647 at 1677.074 kb on + strand, within SM_b21647 at 1677.075 kb on - strand, within SM_b21647 at 1677.075 kb on - strand, within SM_b21647 at 1677.075 kb on - strand, within SM_b21647 at 1677.096 kb on - strand, within SM_b21647 at 1677.096 kb on - strand, within SM_b21647 at 1677.129 kb on - strand, within SM_b21647 at 1677.455 kb on + strand, within SM_b21647 at 1677.455 kb on + strand, within SM_b21647 at 1677.456 kb on - strand, within SM_b21647 at 1677.512 kb on + strand, within SM_b21647 at 1677.513 kb on - strand, within SM_b21647 at 1677.513 kb on - strand, within SM_b21647 at 1677.591 kb on + strand, within SM_b21647 at 1677.591 kb on + strand, within SM_b21647 at 1677.591 kb on + strand, within SM_b21647 at 1677.591 kb on + strand, within SM_b21647 at 1677.591 kb on + strand, within SM_b21647 at 1677.591 kb on + strand, within SM_b21647 at 1677.592 kb on - strand, within SM_b21647 at 1677.592 kb on - strand, within SM_b21647 at 1677.592 kb on - strand, within SM_b21647 at 1677.592 kb on - strand, within SM_b21647 at 1677.592 kb on - strand, within SM_b21647 at 1677.593 kb on + strand, within SM_b21647 at 1677.593 kb on + strand, within SM_b21647 at 1677.593 kb on + strand, within SM_b21647 at 1677.593 kb on + strand, within SM_b21647 at 1677.625 kb on - strand, within SM_b21647 at 1677.626 kb on + strand, within SM_b21647 at 1677.626 kb on + strand, within SM_b21647 at 1677.627 kb on - strand, within SM_b21647 at 1677.627 kb on - strand, within SM_b21647 at 1677.641 kb on + strand, within SM_b21647 at 1677.641 kb on + strand, within SM_b21647 at 1677.642 kb on - strand, within SM_b21647 at 1677.690 kb on + strand, within SM_b21647 at 1677.753 kb on + strand, within SM_b21647 at 1677.755 kb on + strand, within SM_b21647 at 1677.756 kb on - strand, within SM_b21647 at 1677.756 kb on - strand, within SM_b21647 at 1677.855 kb on - strand, within SM_b21647 at 1678.082 kb on + strand, within SM_b21647 at 1678.133 kb on + strand, within SM_b21647 at 1678.304 kb on + strand at 1678.304 kb on + strand at 1678.304 kb on + strand at 1678.304 kb on + strand at 1678.304 kb on + strand at 1678.304 kb on + strand at 1678.304 kb on + strand at 1678.304 kb on + strand at 1678.305 kb on - strand at 1678.390 kb on + strand at 1678.390 kb on + strand at 1678.390 kb on + strand at 1678.391 kb on - strand at 1678.417 kb on - strand at 1678.417 kb on - strand at 1678.654 kb on + strand at 1679.196 kb on - strand, within SM_b21648 at 1679.427 kb on - strand, within SM_b21648
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 1,675,439 + SM_b21646 0.21 -0.6 1,675,440 - SM_b21646 0.21 +1.0 1,675,460 + SM_b21646 0.23 -0.3 1,675,460 + SM_b21646 0.23 -0.6 1,675,460 + SM_b21646 0.23 -0.8 1,675,461 - SM_b21646 0.23 -0.5 1,675,461 - SM_b21646 0.23 -2.1 1,675,461 - SM_b21646 0.23 -1.7 1,675,461 - SM_b21646 0.23 +1.8 1,675,550 + SM_b21646 0.32 -1.2 1,675,596 + SM_b21646 0.37 -0.8 1,675,597 - SM_b21646 0.37 -0.8 1,675,597 - SM_b21646 0.37 +0.2 1,675,597 - SM_b21646 0.37 -1.2 1,675,601 + SM_b21646 0.37 -1.4 1,675,750 - SM_b21646 0.52 -2.5 1,675,750 - SM_b21646 0.52 -2.2 1,675,752 - SM_b21646 0.52 -2.1 1,675,752 - SM_b21646 0.52 -3.0 1,675,752 - SM_b21646 0.52 -1.0 1,675,752 - SM_b21646 0.52 -2.0 1,675,804 + SM_b21646 0.57 -2.1 1,675,835 + SM_b21646 0.60 -1.1 1,675,897 + SM_b21646 0.66 -1.5 1,675,898 - SM_b21646 0.66 -1.1 1,675,962 - SM_b21646 0.73 -1.8 1,675,964 + SM_b21646 0.73 -0.9 1,676,037 + SM_b21646 0.80 -2.3 1,676,060 + SM_b21646 0.82 -1.7 1,676,061 - SM_b21646 0.82 -0.9 1,676,138 + -2.9 1,676,138 + -0.8 1,676,139 - -1.4 1,676,213 - -1.3 1,676,415 - -2.2 1,676,757 + SM_b21647 0.19 -1.6 1,676,758 - SM_b21647 0.19 -1.6 1,676,758 - SM_b21647 0.19 -2.1 1,676,823 - SM_b21647 0.22 -1.7 1,676,931 - SM_b21647 0.28 -0.9 1,677,071 + SM_b21647 0.34 -0.5 1,677,072 - SM_b21647 0.34 -2.5 1,677,074 + SM_b21647 0.34 -0.6 1,677,074 + SM_b21647 0.34 -1.1 1,677,075 - SM_b21647 0.35 +0.6 1,677,075 - SM_b21647 0.35 -1.8 1,677,075 - SM_b21647 0.35 -1.8 1,677,096 - SM_b21647 0.36 -1.7 1,677,096 - SM_b21647 0.36 -0.1 1,677,129 - SM_b21647 0.37 +0.1 1,677,455 + SM_b21647 0.53 -1.1 1,677,455 + SM_b21647 0.53 -1.5 1,677,456 - SM_b21647 0.53 -0.9 1,677,512 + SM_b21647 0.56 -2.2 1,677,513 - SM_b21647 0.56 -1.3 1,677,513 - SM_b21647 0.56 -2.0 1,677,591 + SM_b21647 0.59 -1.2 1,677,591 + SM_b21647 0.59 -1.2 1,677,591 + SM_b21647 0.59 -2.7 1,677,591 + SM_b21647 0.59 -0.8 1,677,591 + SM_b21647 0.59 -0.5 1,677,591 + SM_b21647 0.59 -2.6 1,677,592 - SM_b21647 0.59 -1.2 1,677,592 - SM_b21647 0.59 -1.9 1,677,592 - SM_b21647 0.59 -1.1 1,677,592 - SM_b21647 0.59 +0.2 1,677,592 - SM_b21647 0.59 +2.5 1,677,593 + SM_b21647 0.59 -0.8 1,677,593 + SM_b21647 0.59 -1.7 1,677,593 + SM_b21647 0.59 -0.1 1,677,593 + SM_b21647 0.59 -1.3 1,677,625 - SM_b21647 0.61 -0.8 1,677,626 + SM_b21647 0.61 +1.5 1,677,626 + SM_b21647 0.61 -0.6 1,677,627 - SM_b21647 0.61 -1.2 1,677,627 - SM_b21647 0.61 -1.0 1,677,641 + SM_b21647 0.62 -1.9 1,677,641 + SM_b21647 0.62 -2.2 1,677,642 - SM_b21647 0.62 +0.9 1,677,690 + SM_b21647 0.64 +1.5 1,677,753 + SM_b21647 0.67 -2.3 1,677,755 + SM_b21647 0.67 +0.2 1,677,756 - SM_b21647 0.67 -2.3 1,677,756 - SM_b21647 0.67 -1.6 1,677,855 - SM_b21647 0.72 -0.7 1,678,082 + SM_b21647 0.83 +0.7 1,678,133 + SM_b21647 0.85 -1.4 1,678,304 + +0.2 1,678,304 + -0.8 1,678,304 + -1.1 1,678,304 + -2.1 1,678,304 + +0.9 1,678,304 + -1.6 1,678,304 + -1.8 1,678,304 + -1.8 1,678,305 - -1.3 1,678,390 + -1.9 1,678,390 + -2.0 1,678,390 + -1.7 1,678,391 - -3.1 1,678,417 - -1.9 1,678,417 - -0.7 1,678,654 + -1.7 1,679,196 - SM_b21648 0.32 +1.0 1,679,427 - SM_b21648 0.48 -0.5
Or see this region's nucleotide sequence