Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21603

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21601 and SM_b21602 are separated by 126 nucleotidesSM_b21602 and SM_b21603 are separated by 3 nucleotidesSM_b21603 and SM_b21604 are separated by 78 nucleotides SM_b21601: SM_b21601 - ArsR family transcriptional regulator, at 1,142,033 to 1,142,953 _b21601 SM_b21602: SM_b21602 - sugar uptake ABC transporter permease, at 1,143,080 to 1,143,904 _b21602 SM_b21603: SM_b21603 - sugar uptake ABC transporter permease, at 1,143,908 to 1,144,783 _b21603 SM_b21604: SM_b21604 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,144,862 to 1,146,124 _b21604 Position (kb) 1143 1144 1145Strain fitness (log2 ratio) -1 0 1 2 3at 1142.936 kb on - strandat 1142.953 kb on + strandat 1142.954 kb on - strandat 1143.142 kb on - strandat 1143.195 kb on + strand, within SM_b21602at 1143.306 kb on + strand, within SM_b21602at 1143.306 kb on + strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.354 kb on + strand, within SM_b21602at 1143.520 kb on - strand, within SM_b21602at 1143.520 kb on - strand, within SM_b21602at 1143.630 kb on + strand, within SM_b21602at 1143.631 kb on - strand, within SM_b21602at 1143.699 kb on + strand, within SM_b21602at 1143.699 kb on + strand, within SM_b21602at 1143.735 kb on + strand, within SM_b21602at 1143.785 kb on - strand, within SM_b21602at 1143.825 kb on + strandat 1143.825 kb on + strandat 1143.825 kb on + strandat 1143.825 kb on + strandat 1143.826 kb on - strandat 1143.862 kb on + strandat 1143.863 kb on - strandat 1143.880 kb on + strandat 1143.880 kb on + strandat 1143.936 kb on + strandat 1143.937 kb on - strandat 1143.937 kb on - strandat 1144.029 kb on + strand, within SM_b21603at 1144.030 kb on - strand, within SM_b21603at 1144.050 kb on + strand, within SM_b21603at 1144.050 kb on + strand, within SM_b21603at 1144.051 kb on - strand, within SM_b21603at 1144.051 kb on - strand, within SM_b21603at 1144.051 kb on - strand, within SM_b21603at 1144.051 kb on - strand, within SM_b21603at 1144.087 kb on - strand, within SM_b21603at 1144.221 kb on + strand, within SM_b21603at 1144.222 kb on - strand, within SM_b21603at 1144.222 kb on - strand, within SM_b21603at 1144.323 kb on - strand, within SM_b21603at 1144.403 kb on + strand, within SM_b21603at 1144.446 kb on + strand, within SM_b21603at 1144.446 kb on + strand, within SM_b21603at 1144.446 kb on + strand, within SM_b21603at 1144.447 kb on - strand, within SM_b21603at 1144.447 kb on - strand, within SM_b21603at 1144.541 kb on + strand, within SM_b21603at 1144.542 kb on - strand, within SM_b21603at 1144.617 kb on + strand, within SM_b21603at 1144.666 kb on + strand, within SM_b21603at 1144.687 kb on + strand, within SM_b21603at 1144.687 kb on + strand, within SM_b21603at 1144.687 kb on + strand, within SM_b21603at 1144.687 kb on + strand, within SM_b21603at 1144.687 kb on + strand, within SM_b21603at 1144.688 kb on - strand, within SM_b21603at 1144.688 kb on - strand, within SM_b21603at 1144.690 kb on - strand, within SM_b21603at 1144.716 kb on + strandat 1144.792 kb on + strandat 1144.793 kb on - strandat 1144.857 kb on - strandat 1144.864 kb on - strandat 1144.864 kb on - strandat 1145.385 kb on + strand, within SM_b21604at 1145.386 kb on - strand, within SM_b21604at 1145.391 kb on - strand, within SM_b21604at 1145.406 kb on + strand, within SM_b21604at 1145.517 kb on + strand, within SM_b21604at 1145.518 kb on - strand, within SM_b21604at 1145.518 kb on - strand, within SM_b21604at 1145.518 kb on - strand, within SM_b21604at 1145.518 kb on - strand, within SM_b21604at 1145.689 kb on + strand, within SM_b21604at 1145.690 kb on - strand, within SM_b21604at 1145.690 kb on - strand, within SM_b21604at 1145.690 kb on - strand, within SM_b21604at 1145.691 kb on + strand, within SM_b21604at 1145.692 kb on - strand, within SM_b21604at 1145.692 kb on - strand, within SM_b21604at 1145.692 kb on - strand, within SM_b21604at 1145.694 kb on + strand, within SM_b21604at 1145.730 kb on + strand, within SM_b21604at 1145.731 kb on - strand, within SM_b21604at 1145.731 kb on - strand, within SM_b21604at 1145.731 kb on - strand, within SM_b21604at 1145.731 kb on - strand, within SM_b21604at 1145.770 kb on - strand, within SM_b21604at 1145.770 kb on - strand, within SM_b21604

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,142,936 - +0.6
1,142,953 + -0.7
1,142,954 - +0.9
1,143,142 - -1.1
1,143,195 + SM_b21602 0.14 +0.2
1,143,306 + SM_b21602 0.27 +0.2
1,143,306 + SM_b21602 0.27 -0.8
1,143,307 - SM_b21602 0.28 -0.1
1,143,307 - SM_b21602 0.28 -0.1
1,143,307 - SM_b21602 0.28 -0.0
1,143,307 - SM_b21602 0.28 -0.3
1,143,307 - SM_b21602 0.28 +1.4
1,143,354 + SM_b21602 0.33 +0.1
1,143,520 - SM_b21602 0.53 +0.1
1,143,520 - SM_b21602 0.53 +1.4
1,143,630 + SM_b21602 0.67 +0.5
1,143,631 - SM_b21602 0.67 +0.0
1,143,699 + SM_b21602 0.75 -0.5
1,143,699 + SM_b21602 0.75 +0.1
1,143,735 + SM_b21602 0.79 +0.3
1,143,785 - SM_b21602 0.85 -0.1
1,143,825 + -0.2
1,143,825 + -0.1
1,143,825 + -0.8
1,143,825 + -1.1
1,143,826 - -0.3
1,143,862 + -0.1
1,143,863 - +0.2
1,143,880 + -0.2
1,143,880 + +0.1
1,143,936 + +0.4
1,143,937 - +0.0
1,143,937 - +0.4
1,144,029 + SM_b21603 0.14 +0.1
1,144,030 - SM_b21603 0.14 +0.2
1,144,050 + SM_b21603 0.16 -1.2
1,144,050 + SM_b21603 0.16 -0.1
1,144,051 - SM_b21603 0.16 -0.5
1,144,051 - SM_b21603 0.16 +0.5
1,144,051 - SM_b21603 0.16 +3.1
1,144,051 - SM_b21603 0.16 -0.8
1,144,087 - SM_b21603 0.20 -0.1
1,144,221 + SM_b21603 0.36 -1.2
1,144,222 - SM_b21603 0.36 -0.4
1,144,222 - SM_b21603 0.36 +0.1
1,144,323 - SM_b21603 0.47 +0.2
1,144,403 + SM_b21603 0.57 -0.9
1,144,446 + SM_b21603 0.61 -0.2
1,144,446 + SM_b21603 0.61 -0.9
1,144,446 + SM_b21603 0.61 +0.4
1,144,447 - SM_b21603 0.62 +0.5
1,144,447 - SM_b21603 0.62 +0.1
1,144,541 + SM_b21603 0.72 +1.8
1,144,542 - SM_b21603 0.72 -1.5
1,144,617 + SM_b21603 0.81 +1.4
1,144,666 + SM_b21603 0.87 -0.2
1,144,687 + SM_b21603 0.89 +0.3
1,144,687 + SM_b21603 0.89 -0.1
1,144,687 + SM_b21603 0.89 +0.8
1,144,687 + SM_b21603 0.89 +1.6
1,144,687 + SM_b21603 0.89 +0.0
1,144,688 - SM_b21603 0.89 -1.1
1,144,688 - SM_b21603 0.89 -0.9
1,144,690 - SM_b21603 0.89 -0.3
1,144,716 + +0.4
1,144,792 + -0.0
1,144,793 - -1.1
1,144,857 - -0.5
1,144,864 - -0.7
1,144,864 - -1.3
1,145,385 + SM_b21604 0.41 -0.3
1,145,386 - SM_b21604 0.41 -0.2
1,145,391 - SM_b21604 0.42 -1.3
1,145,406 + SM_b21604 0.43 +0.5
1,145,517 + SM_b21604 0.52 -0.1
1,145,518 - SM_b21604 0.52 -0.4
1,145,518 - SM_b21604 0.52 -0.2
1,145,518 - SM_b21604 0.52 +0.3
1,145,518 - SM_b21604 0.52 +0.2
1,145,689 + SM_b21604 0.65 +0.4
1,145,690 - SM_b21604 0.66 -0.1
1,145,690 - SM_b21604 0.66 -0.4
1,145,690 - SM_b21604 0.66 -0.2
1,145,691 + SM_b21604 0.66 +0.1
1,145,692 - SM_b21604 0.66 -0.8
1,145,692 - SM_b21604 0.66 -0.2
1,145,692 - SM_b21604 0.66 -0.1
1,145,694 + SM_b21604 0.66 +0.0
1,145,730 + SM_b21604 0.69 +0.4
1,145,731 - SM_b21604 0.69 +0.6
1,145,731 - SM_b21604 0.69 -0.0
1,145,731 - SM_b21604 0.69 -0.2
1,145,731 - SM_b21604 0.69 +0.2
1,145,770 - SM_b21604 0.72 -0.5
1,145,770 - SM_b21604 0.72 +1.1

Or see this region's nucleotide sequence