Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21422 and SM_b21423 overlap by 8 nucleotides SM_b21423 and SM_b21424 are separated by 2 nucleotides
SM_b21422: SM_b21422 - sugar uptake ABC transporter ATP-binding protein, at 1,352,736 to 1,354,232
_b21422
SM_b21423: SM_b21423 - sugar uptake ABC transporter permease, at 1,354,225 to 1,355,220
_b21423
SM_b21424: SM_b21424 - esterase or acylase, at 1,355,223 to 1,356,959
_b21424
Position (kb)
1354
1355
1356 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1353.321 kb on + strand, within SM_b21422 at 1353.321 kb on + strand, within SM_b21422 at 1353.322 kb on - strand, within SM_b21422 at 1353.402 kb on - strand, within SM_b21422 at 1353.402 kb on - strand, within SM_b21422 at 1353.437 kb on - strand, within SM_b21422 at 1353.437 kb on - strand, within SM_b21422 at 1353.437 kb on - strand, within SM_b21422 at 1353.593 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.667 kb on - strand, within SM_b21422 at 1353.667 kb on - strand, within SM_b21422 at 1353.667 kb on - strand, within SM_b21422 at 1353.724 kb on + strand, within SM_b21422 at 1353.724 kb on + strand, within SM_b21422 at 1353.724 kb on + strand, within SM_b21422 at 1353.733 kb on + strand, within SM_b21422 at 1353.858 kb on + strand, within SM_b21422 at 1353.859 kb on - strand, within SM_b21422 at 1354.102 kb on - strand at 1354.372 kb on + strand, within SM_b21423 at 1354.372 kb on + strand, within SM_b21423 at 1354.372 kb on + strand, within SM_b21423 at 1354.728 kb on + strand, within SM_b21423 at 1354.729 kb on - strand, within SM_b21423 at 1354.785 kb on + strand, within SM_b21423 at 1354.785 kb on + strand, within SM_b21423 at 1354.785 kb on + strand, within SM_b21423 at 1354.785 kb on + strand, within SM_b21423 at 1354.786 kb on - strand, within SM_b21423 at 1354.834 kb on + strand, within SM_b21423 at 1355.031 kb on + strand, within SM_b21423 at 1355.160 kb on - strand at 1355.160 kb on - strand at 1355.261 kb on + strand at 1355.261 kb on + strand at 1355.263 kb on + strand at 1355.263 kb on + strand at 1355.263 kb on + strand at 1355.263 kb on + strand at 1355.263 kb on + strand at 1355.263 kb on + strand at 1355.264 kb on - strand at 1355.264 kb on - strand at 1355.264 kb on - strand at 1355.264 kb on - strand at 1355.264 kb on - strand at 1355.303 kb on + strand at 1355.420 kb on - strand, within SM_b21424 at 1355.420 kb on - strand, within SM_b21424 at 1355.431 kb on - strand, within SM_b21424 at 1355.451 kb on - strand, within SM_b21424 at 1355.463 kb on + strand, within SM_b21424 at 1355.538 kb on - strand, within SM_b21424 at 1355.583 kb on + strand, within SM_b21424 at 1355.583 kb on + strand, within SM_b21424 at 1355.583 kb on + strand, within SM_b21424 at 1355.583 kb on + strand, within SM_b21424 at 1355.584 kb on - strand, within SM_b21424 at 1355.584 kb on - strand, within SM_b21424 at 1355.685 kb on + strand, within SM_b21424 at 1355.686 kb on - strand, within SM_b21424 at 1355.716 kb on + strand, within SM_b21424 at 1355.716 kb on + strand, within SM_b21424 at 1355.716 kb on + strand, within SM_b21424 at 1355.717 kb on - strand, within SM_b21424 at 1355.717 kb on - strand, within SM_b21424 at 1355.719 kb on + strand, within SM_b21424 at 1355.719 kb on + strand, within SM_b21424 at 1355.719 kb on + strand, within SM_b21424 at 1355.765 kb on + strand, within SM_b21424 at 1355.766 kb on - strand, within SM_b21424 at 1355.892 kb on + strand, within SM_b21424 at 1355.893 kb on - strand, within SM_b21424 at 1356.069 kb on + strand, within SM_b21424 at 1356.069 kb on + strand, within SM_b21424 at 1356.070 kb on - strand, within SM_b21424 at 1356.070 kb on - strand, within SM_b21424 at 1356.092 kb on - strand, within SM_b21424
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 1,353,321 + SM_b21422 0.39 +0.8 1,353,321 + SM_b21422 0.39 +0.1 1,353,322 - SM_b21422 0.39 +0.0 1,353,402 - SM_b21422 0.44 +0.3 1,353,402 - SM_b21422 0.44 +0.5 1,353,437 - SM_b21422 0.47 -0.4 1,353,437 - SM_b21422 0.47 -0.9 1,353,437 - SM_b21422 0.47 +0.8 1,353,593 + SM_b21422 0.57 -0.4 1,353,666 + SM_b21422 0.62 -0.1 1,353,666 + SM_b21422 0.62 -0.1 1,353,666 + SM_b21422 0.62 +0.1 1,353,666 + SM_b21422 0.62 +1.0 1,353,667 - SM_b21422 0.62 +0.6 1,353,667 - SM_b21422 0.62 +0.3 1,353,667 - SM_b21422 0.62 +1.7 1,353,724 + SM_b21422 0.66 +0.4 1,353,724 + SM_b21422 0.66 -0.8 1,353,724 + SM_b21422 0.66 -1.9 1,353,733 + SM_b21422 0.67 -1.2 1,353,858 + SM_b21422 0.75 +0.8 1,353,859 - SM_b21422 0.75 -0.4 1,354,102 - -0.6 1,354,372 + SM_b21423 0.15 -0.5 1,354,372 + SM_b21423 0.15 -0.3 1,354,372 + SM_b21423 0.15 +0.2 1,354,728 + SM_b21423 0.51 -0.2 1,354,729 - SM_b21423 0.51 -1.1 1,354,785 + SM_b21423 0.56 +0.3 1,354,785 + SM_b21423 0.56 -0.9 1,354,785 + SM_b21423 0.56 -1.4 1,354,785 + SM_b21423 0.56 +0.1 1,354,786 - SM_b21423 0.56 -0.6 1,354,834 + SM_b21423 0.61 +0.0 1,355,031 + SM_b21423 0.81 -1.1 1,355,160 - -1.2 1,355,160 - -0.3 1,355,261 + +0.3 1,355,261 + -0.3 1,355,263 + -0.7 1,355,263 + +0.5 1,355,263 + -0.5 1,355,263 + +1.4 1,355,263 + -0.2 1,355,263 + +1.8 1,355,264 - -0.1 1,355,264 - +0.6 1,355,264 - -0.7 1,355,264 - +0.4 1,355,264 - -1.1 1,355,303 + -0.4 1,355,420 - SM_b21424 0.11 +1.2 1,355,420 - SM_b21424 0.11 +0.1 1,355,431 - SM_b21424 0.12 -0.7 1,355,451 - SM_b21424 0.13 +0.3 1,355,463 + SM_b21424 0.14 -0.0 1,355,538 - SM_b21424 0.18 -1.3 1,355,583 + SM_b21424 0.21 +0.2 1,355,583 + SM_b21424 0.21 +0.1 1,355,583 + SM_b21424 0.21 +2.4 1,355,583 + SM_b21424 0.21 -0.2 1,355,584 - SM_b21424 0.21 -0.3 1,355,584 - SM_b21424 0.21 +0.4 1,355,685 + SM_b21424 0.27 -0.0 1,355,686 - SM_b21424 0.27 +0.1 1,355,716 + SM_b21424 0.28 -1.2 1,355,716 + SM_b21424 0.28 +0.0 1,355,716 + SM_b21424 0.28 -0.3 1,355,717 - SM_b21424 0.28 -0.5 1,355,717 - SM_b21424 0.28 -0.7 1,355,719 + SM_b21424 0.29 -0.2 1,355,719 + SM_b21424 0.29 +0.1 1,355,719 + SM_b21424 0.29 -0.8 1,355,765 + SM_b21424 0.31 -1.3 1,355,766 - SM_b21424 0.31 +0.1 1,355,892 + SM_b21424 0.39 -1.7 1,355,893 - SM_b21424 0.39 -0.5 1,356,069 + SM_b21424 0.49 -1.2 1,356,069 + SM_b21424 0.49 -0.2 1,356,070 - SM_b21424 0.49 -1.0 1,356,070 - SM_b21424 0.49 +0.4 1,356,092 - SM_b21424 0.50 -0.0
Or see this region's nucleotide sequence