Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21216

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21139 and SM_b21140 overlap by 4 nucleotidesSM_b21140 and SM_b21216 are separated by 41 nucleotidesSM_b21216 and SM_b21217 overlap by 4 nucleotidesSM_b21217 and SM_b21218 are separated by 2 nucleotides SM_b21139: SM_b21139 - translation initiation inhibitors, at 777,447 to 777,830 _b21139 SM_b21140: SM_b21140 - transcriptional regulator, at 777,827 to 778,687 _b21140 SM_b21216: SM_b21216 - ABC transporter for D-Glucosamine, ATPase component (from data), at 778,729 to 779,811 _b21216 SM_b21217: SM_b21217 - glucosamine kinase (EC 2.7.1.8) (from data), at 779,808 to 780,743 _b21217 SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data), at 780,746 to 781,765 _b21218 Position (kb) 778 779 780Strain fitness (log2 ratio) -3 -2 -1 0 1at 777.816 kb on + strandat 777.817 kb on - strandat 777.853 kb on + strandat 777.853 kb on + strandat 777.854 kb on - strandat 778.019 kb on + strand, within SM_b21140at 778.019 kb on + strand, within SM_b21140at 778.104 kb on - strand, within SM_b21140at 778.122 kb on - strand, within SM_b21140at 778.122 kb on - strand, within SM_b21140at 778.219 kb on + strand, within SM_b21140at 778.226 kb on + strand, within SM_b21140at 778.227 kb on - strand, within SM_b21140at 778.227 kb on - strand, within SM_b21140at 778.280 kb on - strand, within SM_b21140at 778.281 kb on + strand, within SM_b21140at 778.282 kb on - strand, within SM_b21140at 778.282 kb on - strand, within SM_b21140at 778.365 kb on + strand, within SM_b21140at 778.366 kb on - strand, within SM_b21140at 778.366 kb on - strand, within SM_b21140at 778.455 kb on - strand, within SM_b21140at 778.714 kb on - strandat 778.714 kb on - strandat 779.126 kb on + strand, within SM_b21216at 779.127 kb on - strand, within SM_b21216at 779.147 kb on + strand, within SM_b21216at 779.148 kb on - strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.247 kb on - strand, within SM_b21216at 779.561 kb on + strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.982 kb on - strand, within SM_b21217at 780.141 kb on - strand, within SM_b21217at 780.301 kb on + strand, within SM_b21217at 780.301 kb on + strand, within SM_b21217at 780.302 kb on - strand, within SM_b21217at 780.302 kb on - strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.350 kb on - strand, within SM_b21217at 780.577 kb on + strand, within SM_b21217at 780.577 kb on + strand, within SM_b21217at 780.699 kb on + strandat 780.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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777,816 + -0.1
777,817 - -0.7
777,853 + -1.6
777,853 + +0.1
777,854 - +0.5
778,019 + SM_b21140 0.22 -0.6
778,019 + SM_b21140 0.22 -0.1
778,104 - SM_b21140 0.32 -1.2
778,122 - SM_b21140 0.34 -2.8
778,122 - SM_b21140 0.34 +0.2
778,219 + SM_b21140 0.46 -1.9
778,226 + SM_b21140 0.46 -2.8
778,227 - SM_b21140 0.46 -0.6
778,227 - SM_b21140 0.46 -0.5
778,280 - SM_b21140 0.53 -0.7
778,281 + SM_b21140 0.53 -0.3
778,282 - SM_b21140 0.53 -1.0
778,282 - SM_b21140 0.53 -0.5
778,365 + SM_b21140 0.62 +0.3
778,366 - SM_b21140 0.63 -0.2
778,366 - SM_b21140 0.63 -1.6
778,455 - SM_b21140 0.73 -0.7
778,714 - +0.2
778,714 - +1.1
779,126 + SM_b21216 0.37 -0.0
779,127 - SM_b21216 0.37 +0.3
779,147 + SM_b21216 0.39 +1.2
779,148 - SM_b21216 0.39 -0.6
779,246 + SM_b21216 0.48 -0.8
779,246 + SM_b21216 0.48 +0.3
779,246 + SM_b21216 0.48 +0.3
779,246 + SM_b21216 0.48 +0.3
779,247 - SM_b21216 0.48 -0.1
779,561 + SM_b21216 0.77 +0.1
779,562 - SM_b21216 0.77 -0.3
779,562 - SM_b21216 0.77 +0.5
779,562 - SM_b21216 0.77 +0.1
779,562 - SM_b21216 0.77 -0.5
779,982 - SM_b21217 0.19 -0.5
780,141 - SM_b21217 0.36 +0.1
780,301 + SM_b21217 0.53 -0.9
780,301 + SM_b21217 0.53 -0.8
780,302 - SM_b21217 0.53 -0.0
780,302 - SM_b21217 0.53 -0.3
780,311 + SM_b21217 0.54 +0.4
780,311 + SM_b21217 0.54 +0.7
780,311 + SM_b21217 0.54 +1.6
780,350 - SM_b21217 0.58 -0.9
780,577 + SM_b21217 0.82 -1.5
780,577 + SM_b21217 0.82 -0.2
780,699 + -2.7
780,699 + -0.4

Or see this region's nucleotide sequence