Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21198 and SM_b21199 are separated by 1 nucleotides SM_b21199 and SM_b21200 are separated by 202 nucleotides
SM_b21198: SM_b21198 - oligopeptide uptake ABC transporter permease, at 947,584 to 948,714
_b21198
SM_b21199: SM_b21199 - oligopeptide ABC transporter ATP-binding protein, at 948,716 to 950,317
_b21199
SM_b21200: SM_b21200 - two-component response regulator protein, at 950,520 to 951,863
_b21200
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -1
0
1 at 947.755 kb on + strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.777 kb on - strand, within SM_b21198 at 947.815 kb on - strand, within SM_b21198 at 948.047 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.190 kb on - strand, within SM_b21198 at 948.207 kb on + strand, within SM_b21198 at 948.239 kb on - strand, within SM_b21198 at 948.375 kb on + strand at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.558 kb on + strand, within SM_b21198 at 948.599 kb on + strand, within SM_b21198 at 948.599 kb on + strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.747 kb on + strand at 948.747 kb on + strand at 949.043 kb on + strand, within SM_b21199 at 949.043 kb on + strand, within SM_b21199 at 949.044 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.472 kb on + strand, within SM_b21199 at 949.473 kb on - strand, within SM_b21199 at 949.473 kb on - strand, within SM_b21199 at 949.474 kb on + strand, within SM_b21199 at 949.475 kb on - strand, within SM_b21199 at 949.475 kb on - strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.639 kb on + strand, within SM_b21199 at 949.743 kb on - strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.154 kb on - strand, within SM_b21199 at 950.201 kb on + strand at 950.201 kb on + strand at 950.279 kb on + strand at 950.281 kb on + strand at 950.465 kb on - strand at 950.575 kb on + strand at 950.851 kb on + strand, within SM_b21200 at 950.954 kb on - strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 951.040 kb on - strand, within SM_b21200
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 947,755 + SM_b21198 0.15 -0.3 947,756 - SM_b21198 0.15 +1.2 947,756 - SM_b21198 0.15 -0.5 947,776 + SM_b21198 0.17 +1.0 947,776 + SM_b21198 0.17 +1.0 947,777 - SM_b21198 0.17 -0.9 947,815 - SM_b21198 0.20 +0.3 948,047 - SM_b21198 0.41 -0.7 948,168 - SM_b21198 0.52 +1.2 948,168 - SM_b21198 0.52 +0.2 948,168 - SM_b21198 0.52 -0.3 948,190 - SM_b21198 0.54 +0.2 948,207 + SM_b21198 0.55 +0.2 948,239 - SM_b21198 0.58 +0.2 948,375 + +0.7 948,457 - SM_b21198 0.77 +0.7 948,457 - SM_b21198 0.77 -1.7 948,457 - SM_b21198 0.77 -0.0 948,558 + SM_b21198 0.86 -0.2 948,599 + SM_b21198 0.90 +0.7 948,599 + SM_b21198 0.90 -1.0 948,600 - SM_b21198 0.90 -0.1 948,600 - SM_b21198 0.90 -0.1 948,600 - SM_b21198 0.90 +0.4 948,600 - SM_b21198 0.90 -0.1 948,747 + +0.1 948,747 + -0.4 949,043 + SM_b21199 0.20 +0.2 949,043 + SM_b21199 0.20 +0.0 949,044 - SM_b21199 0.20 +0.5 949,383 - SM_b21199 0.42 +0.6 949,383 - SM_b21199 0.42 -0.5 949,383 - SM_b21199 0.42 +0.2 949,447 + SM_b21199 0.46 -0.7 949,447 + SM_b21199 0.46 +0.1 949,447 + SM_b21199 0.46 +0.4 949,472 + SM_b21199 0.47 -0.4 949,473 - SM_b21199 0.47 +0.4 949,473 - SM_b21199 0.47 +0.1 949,474 + SM_b21199 0.47 -0.0 949,475 - SM_b21199 0.47 +0.4 949,475 - SM_b21199 0.47 +0.2 949,571 + SM_b21199 0.53 +0.2 949,571 + SM_b21199 0.53 -0.5 949,573 + SM_b21199 0.53 +0.4 949,573 + SM_b21199 0.53 -0.4 949,574 - SM_b21199 0.54 -0.0 949,574 - SM_b21199 0.54 -0.3 949,639 + SM_b21199 0.58 -0.3 949,743 - SM_b21199 0.64 -0.8 950,153 + SM_b21199 0.90 -0.1 950,153 + SM_b21199 0.90 +0.7 950,153 + SM_b21199 0.90 +0.1 950,154 - SM_b21199 0.90 +0.5 950,201 + -0.3 950,201 + -0.0 950,279 + +0.3 950,281 + -0.3 950,465 - +0.1 950,575 + -0.9 950,851 + SM_b21200 0.25 -0.5 950,954 - SM_b21200 0.32 -0.3 950,985 + SM_b21200 0.35 +0.4 950,985 + SM_b21200 0.35 +0.3 950,985 + SM_b21200 0.35 -0.5 951,040 - SM_b21200 0.39 -0.0
Or see this region's nucleotide sequence