Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21196 and SM_b21197 are separated by 51 nucleotides SM_b21197 and SM_b21198 overlap by 8 nucleotides
SM_b21196: SM_b21196 - oligopeptide uptake ABC transporter substrate-binding protein precursor, at 945,018 to 946,616
_b21196
SM_b21197: SM_b21197 - oligopeptide uptake ABC transporter permease, at 946,668 to 947,591
_b21197
SM_b21198: SM_b21198 - oligopeptide uptake ABC transporter permease, at 947,584 to 948,714
_b21198
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.687 kb on + strand, within SM_b21196 at 945.792 kb on + strand, within SM_b21196 at 945.793 kb on - strand, within SM_b21196 at 945.834 kb on + strand, within SM_b21196 at 945.834 kb on + strand, within SM_b21196 at 945.834 kb on + strand, within SM_b21196 at 945.873 kb on + strand, within SM_b21196 at 945.873 kb on + strand, within SM_b21196 at 945.873 kb on + strand, within SM_b21196 at 945.874 kb on - strand, within SM_b21196 at 945.874 kb on - strand, within SM_b21196 at 945.874 kb on - strand, within SM_b21196 at 945.876 kb on + strand, within SM_b21196 at 945.876 kb on + strand, within SM_b21196 at 945.876 kb on + strand, within SM_b21196 at 945.877 kb on - strand, within SM_b21196 at 945.877 kb on - strand, within SM_b21196 at 945.877 kb on - strand, within SM_b21196 at 945.879 kb on + strand, within SM_b21196 at 945.880 kb on - strand, within SM_b21196 at 945.907 kb on - strand, within SM_b21196 at 945.907 kb on - strand, within SM_b21196 at 945.908 kb on + strand, within SM_b21196 at 945.909 kb on - strand, within SM_b21196 at 946.002 kb on + strand, within SM_b21196 at 946.029 kb on + strand, within SM_b21196 at 946.029 kb on + strand, within SM_b21196 at 946.030 kb on - strand, within SM_b21196 at 946.264 kb on - strand, within SM_b21196 at 946.264 kb on - strand, within SM_b21196 at 946.269 kb on + strand, within SM_b21196 at 946.269 kb on + strand, within SM_b21196 at 946.367 kb on + strand, within SM_b21196 at 946.368 kb on - strand, within SM_b21196 at 946.368 kb on - strand, within SM_b21196 at 946.381 kb on - strand, within SM_b21196 at 946.428 kb on + strand, within SM_b21196 at 946.824 kb on + strand, within SM_b21197 at 946.824 kb on + strand, within SM_b21197 at 946.824 kb on + strand, within SM_b21197 at 946.854 kb on + strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.859 kb on + strand, within SM_b21197 at 946.859 kb on + strand, within SM_b21197 at 946.860 kb on - strand, within SM_b21197 at 946.863 kb on + strand at 946.863 kb on + strand, within SM_b21197 at 946.863 kb on + strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.868 kb on - strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.903 kb on - strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.985 kb on - strand, within SM_b21197 at 946.985 kb on - strand, within SM_b21197 at 947.302 kb on - strand, within SM_b21197 at 947.370 kb on + strand, within SM_b21197 at 947.371 kb on - strand, within SM_b21197 at 947.371 kb on - strand, within SM_b21197 at 947.432 kb on + strand, within SM_b21197 at 947.433 kb on - strand, within SM_b21197 at 947.433 kb on - strand, within SM_b21197 at 947.435 kb on - strand, within SM_b21197 at 947.435 kb on - strand, within SM_b21197 at 947.452 kb on - strand, within SM_b21197 at 947.452 kb on - strand, within SM_b21197 at 947.481 kb on + strand, within SM_b21197 at 947.481 kb on + strand, within SM_b21197 at 947.482 kb on - strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.549 kb on + strand at 947.590 kb on + strand at 947.592 kb on + strand at 947.755 kb on + strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.777 kb on - strand, within SM_b21198 at 947.815 kb on - strand, within SM_b21198 at 948.047 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.190 kb on - strand, within SM_b21198 at 948.207 kb on + strand, within SM_b21198 at 948.239 kb on - strand, within SM_b21198 at 948.375 kb on + strand at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.558 kb on + strand, within SM_b21198
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 945,687 + SM_b21196 0.42 -0.5 945,792 + SM_b21196 0.48 -0.1 945,793 - SM_b21196 0.48 -0.2 945,834 + SM_b21196 0.51 -0.4 945,834 + SM_b21196 0.51 +0.7 945,834 + SM_b21196 0.51 -0.5 945,873 + SM_b21196 0.53 -0.8 945,873 + SM_b21196 0.53 +0.6 945,873 + SM_b21196 0.53 +0.8 945,874 - SM_b21196 0.54 +0.2 945,874 - SM_b21196 0.54 -0.3 945,874 - SM_b21196 0.54 -0.7 945,876 + SM_b21196 0.54 -0.2 945,876 + SM_b21196 0.54 +2.5 945,876 + SM_b21196 0.54 -0.0 945,877 - SM_b21196 0.54 +0.4 945,877 - SM_b21196 0.54 -0.3 945,877 - SM_b21196 0.54 +0.2 945,879 + SM_b21196 0.54 -0.3 945,880 - SM_b21196 0.54 +0.5 945,907 - SM_b21196 0.56 -0.4 945,907 - SM_b21196 0.56 -0.1 945,908 + SM_b21196 0.56 -0.3 945,909 - SM_b21196 0.56 -0.5 946,002 + SM_b21196 0.62 +0.0 946,029 + SM_b21196 0.63 -0.1 946,029 + SM_b21196 0.63 +0.6 946,030 - SM_b21196 0.63 +0.6 946,264 - SM_b21196 0.78 +0.2 946,264 - SM_b21196 0.78 +0.1 946,269 + SM_b21196 0.78 -0.2 946,269 + SM_b21196 0.78 +1.0 946,367 + SM_b21196 0.84 +0.2 946,368 - SM_b21196 0.84 +0.3 946,368 - SM_b21196 0.84 +0.2 946,381 - SM_b21196 0.85 -0.3 946,428 + SM_b21196 0.88 +0.3 946,824 + SM_b21197 0.17 +0.2 946,824 + SM_b21197 0.17 -0.3 946,824 + SM_b21197 0.17 -0.1 946,854 + SM_b21197 0.20 -0.2 946,855 - SM_b21197 0.20 +0.4 946,855 - SM_b21197 0.20 +1.8 946,855 - SM_b21197 0.20 -0.6 946,855 - SM_b21197 0.20 +0.1 946,859 + SM_b21197 0.21 -1.3 946,859 + SM_b21197 0.21 -0.1 946,860 - SM_b21197 0.21 +0.5 946,863 + -0.3 946,863 + SM_b21197 0.21 +0.7 946,863 + SM_b21197 0.21 +0.3 946,864 - SM_b21197 0.21 -0.1 946,864 - SM_b21197 0.21 +0.5 946,864 - SM_b21197 0.21 -0.3 946,864 - SM_b21197 0.21 -0.2 946,864 - SM_b21197 0.21 -1.5 946,864 - SM_b21197 0.21 -1.0 946,867 + SM_b21197 0.22 +0.2 946,867 + SM_b21197 0.22 -2.3 946,867 + SM_b21197 0.22 -1.5 946,868 - SM_b21197 0.22 -0.1 946,902 + SM_b21197 0.25 +0.5 946,902 + SM_b21197 0.25 +0.4 946,902 + SM_b21197 0.25 +0.1 946,903 - SM_b21197 0.25 +0.9 946,908 + SM_b21197 0.26 +0.2 946,908 + SM_b21197 0.26 -1.0 946,908 + SM_b21197 0.26 -0.8 946,985 - SM_b21197 0.34 +0.3 946,985 - SM_b21197 0.34 -0.1 947,302 - SM_b21197 0.69 +1.5 947,370 + SM_b21197 0.76 +0.0 947,371 - SM_b21197 0.76 +0.1 947,371 - SM_b21197 0.76 -0.5 947,432 + SM_b21197 0.83 +0.6 947,433 - SM_b21197 0.83 -0.1 947,433 - SM_b21197 0.83 +0.8 947,435 - SM_b21197 0.83 -0.4 947,435 - SM_b21197 0.83 +0.9 947,452 - SM_b21197 0.85 +0.9 947,452 - SM_b21197 0.85 -0.0 947,481 + SM_b21197 0.88 -0.4 947,481 + SM_b21197 0.88 -0.4 947,482 - SM_b21197 0.88 +0.1 947,483 + SM_b21197 0.88 -0.6 947,483 + SM_b21197 0.88 +0.1 947,483 + SM_b21197 0.88 +0.3 947,483 + SM_b21197 0.88 +1.3 947,484 - SM_b21197 0.88 +0.4 947,484 - SM_b21197 0.88 +0.4 947,484 - SM_b21197 0.88 -0.3 947,484 - SM_b21197 0.88 -0.3 947,549 + +0.3 947,590 + +0.0 947,592 + -1.5 947,755 + SM_b21198 0.15 -0.3 947,756 - SM_b21198 0.15 +1.2 947,756 - SM_b21198 0.15 -0.5 947,776 + SM_b21198 0.17 +1.0 947,776 + SM_b21198 0.17 +1.0 947,777 - SM_b21198 0.17 -0.9 947,815 - SM_b21198 0.20 +0.3 948,047 - SM_b21198 0.41 -0.7 948,168 - SM_b21198 0.52 +1.2 948,168 - SM_b21198 0.52 +0.2 948,168 - SM_b21198 0.52 -0.3 948,190 - SM_b21198 0.54 +0.2 948,207 + SM_b21198 0.55 +0.2 948,239 - SM_b21198 0.58 +0.2 948,375 + +0.7 948,457 - SM_b21198 0.77 +0.7 948,457 - SM_b21198 0.77 -1.7 948,457 - SM_b21198 0.77 -0.0 948,558 + SM_b21198 0.86 -0.2
Or see this region's nucleotide sequence