Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21174 and SM_b21175 are separated by 9 nucleotides SM_b21175 and SM_b21176 are separated by 171 nucleotides
SM_b21174: SM_b21174 - phosphate uptake ABC transporter permease, at 919,613 to 921,130
_b21174
SM_b21175: SM_b21175 - phosphate uptake ABC transporter permease, at 921,140 to 922,102
_b21175
SM_b21176: SM_b21176 - phosphate uptake ABC transporter substrate-binding protein precursor, at 922,274 to 923,179
_b21176
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 920.331 kb on + strand, within SM_b21174 at 920.908 kb on - strand, within SM_b21174 at 920.913 kb on - strand, within SM_b21174 at 920.929 kb on - strand, within SM_b21174 at 921.088 kb on + strand at 921.141 kb on + strand at 921.141 kb on + strand at 921.366 kb on + strand, within SM_b21175 at 921.756 kb on + strand, within SM_b21175 at 921.786 kb on + strand, within SM_b21175 at 921.811 kb on - strand, within SM_b21175 at 922.011 kb on + strand at 922.085 kb on - strand at 922.476 kb on - strand, within SM_b21176 at 922.796 kb on - strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.900 kb on - strand, within SM_b21176 at 922.978 kb on - strand, within SM_b21176
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 920,331 + SM_b21174 0.47 -1.2 920,908 - SM_b21174 0.85 +0.1 920,913 - SM_b21174 0.86 -1.9 920,929 - SM_b21174 0.87 -2.8 921,088 + -2.4 921,141 + -2.1 921,141 + -2.3 921,366 + SM_b21175 0.23 -2.9 921,756 + SM_b21175 0.64 -2.2 921,786 + SM_b21175 0.67 -1.5 921,811 - SM_b21175 0.70 -2.4 922,011 + -2.6 922,085 - -3.0 922,476 - SM_b21176 0.22 -2.8 922,796 - SM_b21176 0.58 -2.8 922,899 + SM_b21176 0.69 +1.7 922,899 + SM_b21176 0.69 -1.9 922,899 + SM_b21176 0.69 -1.9 922,900 - SM_b21176 0.69 -3.0 922,978 - SM_b21176 0.78 +1.0
Or see this region's nucleotide sequence