Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21175

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21174 and SM_b21175 are separated by 9 nucleotidesSM_b21175 and SM_b21176 are separated by 171 nucleotides SM_b21174: SM_b21174 - phosphate uptake ABC transporter permease, at 919,613 to 921,130 _b21174 SM_b21175: SM_b21175 - phosphate uptake ABC transporter permease, at 921,140 to 922,102 _b21175 SM_b21176: SM_b21176 - phosphate uptake ABC transporter substrate-binding protein precursor, at 922,274 to 923,179 _b21176 Position (kb) 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1at 920.331 kb on + strand, within SM_b21174at 920.908 kb on - strand, within SM_b21174at 920.913 kb on - strand, within SM_b21174at 920.929 kb on - strand, within SM_b21174at 921.088 kb on + strandat 921.141 kb on + strandat 921.141 kb on + strandat 921.366 kb on + strand, within SM_b21175at 921.756 kb on + strand, within SM_b21175at 921.786 kb on + strand, within SM_b21175at 921.811 kb on - strand, within SM_b21175at 922.011 kb on + strandat 922.085 kb on - strandat 922.476 kb on - strand, within SM_b21176at 922.796 kb on - strand, within SM_b21176at 922.899 kb on + strand, within SM_b21176at 922.899 kb on + strand, within SM_b21176at 922.899 kb on + strand, within SM_b21176at 922.900 kb on - strand, within SM_b21176at 922.978 kb on - strand, within SM_b21176

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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920,331 + SM_b21174 0.47 -1.2
920,908 - SM_b21174 0.85 +0.1
920,913 - SM_b21174 0.86 -1.9
920,929 - SM_b21174 0.87 -2.8
921,088 + -2.4
921,141 + -2.1
921,141 + -2.3
921,366 + SM_b21175 0.23 -2.9
921,756 + SM_b21175 0.64 -2.2
921,786 + SM_b21175 0.67 -1.5
921,811 - SM_b21175 0.70 -2.4
922,011 + -2.6
922,085 - -3.0
922,476 - SM_b21176 0.22 -2.8
922,796 - SM_b21176 0.58 -2.8
922,899 + SM_b21176 0.69 +1.7
922,899 + SM_b21176 0.69 -1.9
922,899 + SM_b21176 0.69 -1.9
922,900 - SM_b21176 0.69 -3.0
922,978 - SM_b21176 0.78 +1.0

Or see this region's nucleotide sequence