Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21132

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21130 and SM_b21131 are separated by 15 nucleotidesSM_b21131 and SM_b21132 overlap by 17 nucleotidesSM_b21132 and SM_b21133 overlap by 4 nucleotides SM_b21130: SM_b21130 - sulfate ABC transporter ATP-binding protein, at 769,044 to 770,147 _b21130 SM_b21131: SM_b21131 - sulfate ABC transporter permease, at 770,163 to 771,044 _b21131 SM_b21132: SM_b21132 - sulfate ABC transporter permease, at 771,028 to 771,894 _b21132 SM_b21133: SM_b21133 - sulfate ABC transporter substrate-binding protein, at 771,891 to 772,916 _b21133 Position (kb) 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 770.285 kb on + strand, within SM_b21131at 770.286 kb on - strand, within SM_b21131at 770.286 kb on - strand, within SM_b21131at 770.286 kb on - strand, within SM_b21131at 770.287 kb on + strandat 770.288 kb on - strand, within SM_b21131at 770.294 kb on + strand, within SM_b21131at 770.294 kb on + strand, within SM_b21131at 770.294 kb on + strand, within SM_b21131at 770.294 kb on + strand, within SM_b21131at 770.296 kb on + strand, within SM_b21131at 770.342 kb on + strand, within SM_b21131at 770.427 kb on + strand, within SM_b21131at 770.428 kb on - strand, within SM_b21131at 770.429 kb on + strand, within SM_b21131at 770.611 kb on + strand, within SM_b21131at 770.611 kb on + strand, within SM_b21131at 770.612 kb on - strand, within SM_b21131at 770.640 kb on - strand, within SM_b21131at 771.008 kb on + strandat 771.009 kb on - strandat 771.012 kb on - strandat 771.012 kb on - strandat 771.020 kb on - strandat 771.038 kb on + strandat 771.044 kb on + strandat 771.044 kb on + strandat 771.230 kb on + strand, within SM_b21132at 771.231 kb on - strand, within SM_b21132at 771.510 kb on - strand, within SM_b21132at 771.510 kb on - strand, within SM_b21132at 771.908 kb on - strandat 771.908 kb on - strandat 771.908 kb on - strandat 772.052 kb on - strand, within SM_b21133at 772.054 kb on + strand, within SM_b21133at 772.054 kb on + strand, within SM_b21133at 772.055 kb on - strand, within SM_b21133at 772.091 kb on - strand, within SM_b21133at 772.096 kb on + strand, within SM_b21133at 772.096 kb on + strand, within SM_b21133at 772.105 kb on + strand, within SM_b21133at 772.240 kb on + strand, within SM_b21133at 772.241 kb on - strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.267 kb on - strand, within SM_b21133at 772.357 kb on + strand, within SM_b21133at 772.357 kb on + strand, within SM_b21133at 772.357 kb on + strand, within SM_b21133at 772.386 kb on - strand, within SM_b21133at 772.552 kb on + strand, within SM_b21133at 772.553 kb on - strand, within SM_b21133at 772.783 kb on + strand, within SM_b21133at 772.784 kb on - strand, within SM_b21133at 772.784 kb on - strand, within SM_b21133at 772.784 kb on - strand, within SM_b21133at 772.804 kb on + strand, within SM_b21133at 772.804 kb on + strand, within SM_b21133

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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770,285 + SM_b21131 0.14 -3.3
770,286 - SM_b21131 0.14 -1.0
770,286 - SM_b21131 0.14 -0.9
770,286 - SM_b21131 0.14 -0.5
770,287 + -0.5
770,288 - SM_b21131 0.14 -0.8
770,294 + SM_b21131 0.15 -0.1
770,294 + SM_b21131 0.15 -0.7
770,294 + SM_b21131 0.15 -0.4
770,294 + SM_b21131 0.15 -0.9
770,296 + SM_b21131 0.15 +0.3
770,342 + SM_b21131 0.20 +0.2
770,427 + SM_b21131 0.30 -0.2
770,428 - SM_b21131 0.30 -0.7
770,429 + SM_b21131 0.30 -1.8
770,611 + SM_b21131 0.51 +0.1
770,611 + SM_b21131 0.51 -0.9
770,612 - SM_b21131 0.51 +0.7
770,640 - SM_b21131 0.54 +1.6
771,008 + +0.7
771,009 - -0.4
771,012 - -0.8
771,012 - +0.6
771,020 - +0.2
771,038 + -0.5
771,044 + -1.9
771,044 + -0.5
771,230 + SM_b21132 0.23 -1.1
771,231 - SM_b21132 0.23 -0.9
771,510 - SM_b21132 0.56 -1.2
771,510 - SM_b21132 0.56 +0.0
771,908 - -1.2
771,908 - -0.8
771,908 - -0.3
772,052 - SM_b21133 0.16 +0.3
772,054 + SM_b21133 0.16 -1.2
772,054 + SM_b21133 0.16 -1.9
772,055 - SM_b21133 0.16 -1.8
772,091 - SM_b21133 0.19 -0.6
772,096 + SM_b21133 0.20 -0.2
772,096 + SM_b21133 0.20 -2.1
772,105 + SM_b21133 0.21 +1.2
772,240 + SM_b21133 0.34 -0.1
772,241 - SM_b21133 0.34 +0.1
772,266 + SM_b21133 0.37 -0.3
772,266 + SM_b21133 0.37 +0.0
772,266 + SM_b21133 0.37 -0.5
772,266 + SM_b21133 0.37 +0.1
772,266 + SM_b21133 0.37 -1.4
772,267 - SM_b21133 0.37 -1.2
772,357 + SM_b21133 0.45 -1.7
772,357 + SM_b21133 0.45 +1.9
772,357 + SM_b21133 0.45 -2.2
772,386 - SM_b21133 0.48 -1.2
772,552 + SM_b21133 0.64 -0.1
772,553 - SM_b21133 0.65 +0.0
772,783 + SM_b21133 0.87 -0.9
772,784 - SM_b21133 0.87 -0.9
772,784 - SM_b21133 0.87 -0.6
772,784 - SM_b21133 0.87 -1.3
772,804 + SM_b21133 0.89 -0.3
772,804 + SM_b21133 0.89 -1.0

Or see this region's nucleotide sequence