Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20942

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20941 and SM_b20942 are separated by 532 nucleotidesSM_b20942 and SM_b20943 are separated by 85 nucleotides SM_b20941: SM_b20941 - MsbA-like saccharide exporting ABC transporter ATP-binding/permease subunits, at 1,165,803 to 1,167,617 _b20941 SM_b20942: SM_b20942 - UDP glucose 4-epimerase, at 1,168,150 to 1,169,136 _b20942 SM_b20943: SM_b20943 - acetyltransferase, at 1,169,222 to 1,170,175 _b20943 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -2 -1 0 1at 1167.476 kb on + strandat 1167.477 kb on - strandat 1167.511 kb on - strandat 1167.608 kb on + strandat 1167.617 kb on + strandat 1167.617 kb on + strandat 1167.617 kb on + strandat 1167.618 kb on - strandat 1167.719 kb on - strandat 1167.811 kb on - strandat 1167.835 kb on + strandat 1167.836 kb on - strandat 1167.871 kb on - strandat 1167.902 kb on + strandat 1167.969 kb on + strandat 1168.190 kb on - strandat 1168.423 kb on + strand, within SM_b20942at 1168.554 kb on + strand, within SM_b20942at 1168.628 kb on - strand, within SM_b20942at 1168.628 kb on - strand, within SM_b20942at 1168.646 kb on + strand, within SM_b20942at 1168.658 kb on - strand, within SM_b20942at 1168.790 kb on - strand, within SM_b20942at 1168.822 kb on + strand, within SM_b20942at 1168.822 kb on + strand, within SM_b20942at 1168.825 kb on - strand, within SM_b20942at 1168.825 kb on - strand, within SM_b20942at 1168.825 kb on - strand, within SM_b20942at 1168.870 kb on + strand, within SM_b20942at 1169.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,167,476 + -0.8
1,167,477 - -1.0
1,167,511 - -0.1
1,167,608 + -0.1
1,167,617 + +0.6
1,167,617 + +0.4
1,167,617 + -1.1
1,167,618 - -0.2
1,167,719 - -1.3
1,167,811 - +0.1
1,167,835 + +0.1
1,167,836 - -0.4
1,167,871 - -0.0
1,167,902 + -0.5
1,167,969 + +0.2
1,168,190 - -0.4
1,168,423 + SM_b20942 0.28 -0.4
1,168,554 + SM_b20942 0.41 -0.1
1,168,628 - SM_b20942 0.48 -1.2
1,168,628 - SM_b20942 0.48 +0.2
1,168,646 + SM_b20942 0.50 -0.6
1,168,658 - SM_b20942 0.51 +0.4
1,168,790 - SM_b20942 0.65 +0.1
1,168,822 + SM_b20942 0.68 -0.9
1,168,822 + SM_b20942 0.68 -2.6
1,168,825 - SM_b20942 0.68 +0.6
1,168,825 - SM_b20942 0.68 -0.5
1,168,825 - SM_b20942 0.68 -1.5
1,168,870 + SM_b20942 0.73 +0.4
1,169,055 - +1.4

Or see this region's nucleotide sequence