Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20758

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20757 and SM_b20758 are separated by 11 nucleotidesSM_b20758 and SM_b20759 are separated by 122 nucleotidesSM_b20759 and SM_b20760 overlap by 1 nucleotides SM_b20757: SM_b20757 - methylmalonyl-CoA mutase, at 1,548,979 to 1,551,117 _b20757 SM_b20758: SM_b20758 - ArsR family transcriptional regulator, at 1,551,129 to 1,551,863 _b20758 SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456 _b20759 SM_b20760: SM_b20760 - carbon-phosphorus lyase, at 1,552,456 to 1,553,058 _b20760 Position (kb) 1551 1552Strain fitness (log2 ratio) -2 -1 0 1at 1550.162 kb on - strand, within SM_b20757at 1550.162 kb on - strand, within SM_b20757at 1550.164 kb on + strand, within SM_b20757at 1550.351 kb on - strand, within SM_b20757at 1550.351 kb on - strand, within SM_b20757at 1550.632 kb on - strand, within SM_b20757at 1550.635 kb on + strand, within SM_b20757at 1550.636 kb on - strand, within SM_b20757at 1550.647 kb on + strand, within SM_b20757at 1551.004 kb on + strandat 1551.004 kb on + strandat 1551.005 kb on - strandat 1551.011 kb on - strandat 1551.201 kb on + strandat 1551.371 kb on - strand, within SM_b20758at 1551.409 kb on + strand, within SM_b20758at 1551.409 kb on + strand, within SM_b20758at 1551.410 kb on - strand, within SM_b20758at 1551.773 kb on - strand, within SM_b20758at 1551.823 kb on - strandat 1551.944 kb on - strandat 1552.478 kb on - strandat 1552.479 kb on + strandat 1552.661 kb on + strand, within SM_b20760at 1552.817 kb on - strand, within SM_b20760

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,550,162 - SM_b20757 0.55 -2.0
1,550,162 - SM_b20757 0.55 -2.5
1,550,164 + SM_b20757 0.55 -0.8
1,550,351 - SM_b20757 0.64 -1.0
1,550,351 - SM_b20757 0.64 -1.1
1,550,632 - SM_b20757 0.77 -1.0
1,550,635 + SM_b20757 0.77 -1.3
1,550,636 - SM_b20757 0.77 -1.0
1,550,647 + SM_b20757 0.78 -0.2
1,551,004 + -1.3
1,551,004 + -0.5
1,551,005 - +1.7
1,551,011 - -0.6
1,551,201 + -1.1
1,551,371 - SM_b20758 0.33 -2.1
1,551,409 + SM_b20758 0.38 +0.3
1,551,409 + SM_b20758 0.38 -0.5
1,551,410 - SM_b20758 0.38 -2.5
1,551,773 - SM_b20758 0.88 -0.8
1,551,823 - -1.1
1,551,944 - +1.2
1,552,478 - +0.2
1,552,479 + -0.2
1,552,661 + SM_b20760 0.34 +0.3
1,552,817 - SM_b20760 0.60 -0.4

Or see this region's nucleotide sequence