Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20756

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20755 and SM_b20756 are separated by 12 nucleotidesSM_b20756 and SM_b20757 are separated by 225 nucleotides SM_b20755: SM_b20755 - propionyl-CoA carboxylase subunit beta, at 1,545,196 to 1,546,728 _b20755 SM_b20756: SM_b20756 - propionyl-CoA carboxylase subunit alpha, at 1,546,741 to 1,548,753 _b20756 SM_b20757: SM_b20757 - methylmalonyl-CoA mutase, at 1,548,979 to 1,551,117 _b20757 Position (kb) 1546 1547 1548 1549Strain fitness (log2 ratio) -2 -1 0 1 2at 1545.760 kb on + strand, within SM_b20755at 1545.760 kb on + strand, within SM_b20755at 1545.761 kb on - strand, within SM_b20755at 1546.011 kb on - strand, within SM_b20755at 1546.036 kb on + strand, within SM_b20755at 1546.037 kb on - strand, within SM_b20755at 1546.351 kb on + strand, within SM_b20755at 1546.352 kb on - strand, within SM_b20755at 1546.352 kb on - strand, within SM_b20755at 1546.399 kb on + strand, within SM_b20755at 1546.400 kb on - strand, within SM_b20755at 1546.411 kb on + strand, within SM_b20755at 1546.453 kb on + strand, within SM_b20755at 1546.453 kb on + strand, within SM_b20755at 1546.454 kb on - strand, within SM_b20755at 1546.454 kb on - strand, within SM_b20755at 1546.513 kb on + strand, within SM_b20755at 1546.514 kb on - strand, within SM_b20755at 1546.614 kb on - strandat 1546.928 kb on - strandat 1546.928 kb on - strandat 1546.928 kb on - strandat 1546.944 kb on + strand, within SM_b20756at 1547.152 kb on - strand, within SM_b20756at 1547.152 kb on - strand, within SM_b20756at 1547.410 kb on - strand, within SM_b20756at 1547.416 kb on + strand, within SM_b20756at 1547.416 kb on + strand, within SM_b20756at 1547.417 kb on - strand, within SM_b20756at 1547.417 kb on - strand, within SM_b20756at 1547.909 kb on - strand, within SM_b20756at 1547.909 kb on - strand, within SM_b20756at 1547.911 kb on + strand, within SM_b20756at 1547.911 kb on + strand, within SM_b20756at 1547.912 kb on - strand, within SM_b20756at 1548.086 kb on - strand, within SM_b20756at 1548.313 kb on + strand, within SM_b20756at 1548.313 kb on + strand, within SM_b20756at 1548.313 kb on + strand, within SM_b20756at 1548.314 kb on - strand, within SM_b20756at 1548.314 kb on - strand, within SM_b20756at 1548.440 kb on + strand, within SM_b20756at 1548.658 kb on - strandat 1548.816 kb on + strandat 1549.178 kb on - strandat 1549.208 kb on - strand, within SM_b20757at 1549.246 kb on + strand, within SM_b20757at 1549.570 kb on + strand, within SM_b20757at 1549.570 kb on + strand, within SM_b20757at 1549.571 kb on - strand, within SM_b20757at 1549.576 kb on + strand, within SM_b20757at 1549.577 kb on - strandat 1549.623 kb on + strand, within SM_b20757at 1549.738 kb on + strand, within SM_b20757

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,545,760 + SM_b20755 0.37 +0.8
1,545,760 + SM_b20755 0.37 -1.0
1,545,761 - SM_b20755 0.37 -0.2
1,546,011 - SM_b20755 0.53 -0.8
1,546,036 + SM_b20755 0.55 +1.4
1,546,037 - SM_b20755 0.55 +1.5
1,546,351 + SM_b20755 0.75 -0.5
1,546,352 - SM_b20755 0.75 -0.7
1,546,352 - SM_b20755 0.75 -0.8
1,546,399 + SM_b20755 0.78 -0.3
1,546,400 - SM_b20755 0.79 +0.7
1,546,411 + SM_b20755 0.79 -0.1
1,546,453 + SM_b20755 0.82 +1.7
1,546,453 + SM_b20755 0.82 -0.3
1,546,454 - SM_b20755 0.82 -0.3
1,546,454 - SM_b20755 0.82 -0.8
1,546,513 + SM_b20755 0.86 -0.8
1,546,514 - SM_b20755 0.86 -1.3
1,546,614 - -0.7
1,546,928 - +0.0
1,546,928 - -0.2
1,546,928 - -1.0
1,546,944 + SM_b20756 0.10 +0.9
1,547,152 - SM_b20756 0.20 -0.4
1,547,152 - SM_b20756 0.20 -0.3
1,547,410 - SM_b20756 0.33 -0.8
1,547,416 + SM_b20756 0.34 -0.4
1,547,416 + SM_b20756 0.34 -0.2
1,547,417 - SM_b20756 0.34 +0.2
1,547,417 - SM_b20756 0.34 +0.3
1,547,909 - SM_b20756 0.58 -0.7
1,547,909 - SM_b20756 0.58 -0.2
1,547,911 + SM_b20756 0.58 -1.2
1,547,911 + SM_b20756 0.58 -0.9
1,547,912 - SM_b20756 0.58 +0.3
1,548,086 - SM_b20756 0.67 +0.5
1,548,313 + SM_b20756 0.78 -0.2
1,548,313 + SM_b20756 0.78 +2.5
1,548,313 + SM_b20756 0.78 +1.0
1,548,314 - SM_b20756 0.78 -0.9
1,548,314 - SM_b20756 0.78 -0.1
1,548,440 + SM_b20756 0.84 -1.2
1,548,658 - -0.2
1,548,816 + -0.9
1,549,178 - -0.3
1,549,208 - SM_b20757 0.11 -0.1
1,549,246 + SM_b20757 0.12 -0.7
1,549,570 + SM_b20757 0.28 -1.6
1,549,570 + SM_b20757 0.28 -1.6
1,549,571 - SM_b20757 0.28 -1.3
1,549,576 + SM_b20757 0.28 -1.4
1,549,577 - +2.5
1,549,623 + SM_b20757 0.30 -0.5
1,549,738 + SM_b20757 0.35 -2.1

Or see this region's nucleotide sequence