Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20209 and SM_b20210 are separated by 54 nucleotides SM_b20210 and SM_b20211 are separated by 141 nucleotides SM_b20211 and SM_b20212 are separated by 187 nucleotides SM_b20212 and SM_b20213 are separated by 37 nucleotides
SM_b20209: SM_b20209 - hypothetical protein, at 216,993 to 217,232
_b20209
SM_b20210: SM_b20210 - oxidoreductase, at 217,287 to 218,000
_b20210
SM_b20211: SM_b20211 - transcriptional regulator, at 218,142 to 219,074
_b20211
SM_b20212: SM_b20212 - hypothetical protein, at 219,262 to 219,942
_b20212
SM_b20213: SM_b20213 - hypothetical protein, at 219,980 to 221,863
_b20213
Position (kb) 218
219
220 Strain fitness (log2 ratio) -1
0
1
2 at 217.215 kb on + strand at 217.215 kb on + strand at 217.216 kb on - strand at 217.227 kb on - strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.465 kb on - strand, within SM_b20210 at 217.623 kb on - strand, within SM_b20210 at 217.860 kb on + strand, within SM_b20210 at 218.322 kb on + strand, within SM_b20211 at 218.322 kb on + strand, within SM_b20211 at 218.322 kb on + strand, within SM_b20211 at 218.322 kb on + strand, within SM_b20211 at 218.323 kb on - strand, within SM_b20211 at 218.323 kb on - strand, within SM_b20211 at 218.326 kb on + strand, within SM_b20211 at 218.326 kb on + strand, within SM_b20211 at 218.327 kb on - strand, within SM_b20211 at 218.327 kb on - strand, within SM_b20211 at 218.341 kb on + strand, within SM_b20211 at 218.347 kb on + strand, within SM_b20211 at 218.348 kb on - strand, within SM_b20211 at 218.757 kb on + strand, within SM_b20211 at 218.757 kb on + strand, within SM_b20211 at 218.758 kb on - strand, within SM_b20211 at 218.758 kb on - strand, within SM_b20211 at 218.758 kb on - strand, within SM_b20211 at 218.881 kb on + strand, within SM_b20211 at 218.882 kb on - strand, within SM_b20211 at 219.074 kb on + strand at 219.190 kb on - strand at 219.191 kb on + strand at 219.210 kb on + strand at 219.219 kb on + strand at 219.359 kb on - strand, within SM_b20212 at 219.361 kb on + strand, within SM_b20212 at 219.362 kb on - strand, within SM_b20212 at 219.362 kb on - strand, within SM_b20212 at 219.362 kb on - strand, within SM_b20212 at 219.514 kb on - strand, within SM_b20212 at 219.524 kb on + strand, within SM_b20212 at 219.524 kb on + strand, within SM_b20212 at 219.525 kb on - strand, within SM_b20212 at 219.562 kb on + strand, within SM_b20212 at 219.563 kb on - strand, within SM_b20212 at 219.634 kb on + strand, within SM_b20212 at 219.635 kb on - strand, within SM_b20212 at 219.826 kb on + strand, within SM_b20212 at 219.940 kb on + strand at 219.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 217,215 + +0.3 217,215 + -0.2 217,216 - +1.5 217,227 - +0.1 217,279 + -0.1 217,279 + -0.2 217,279 + +0.6 217,465 - SM_b20210 0.25 +0.2 217,623 - SM_b20210 0.47 +0.0 217,860 + SM_b20210 0.80 +0.4 218,322 + SM_b20211 0.19 +0.2 218,322 + SM_b20211 0.19 -0.0 218,322 + SM_b20211 0.19 -0.2 218,322 + SM_b20211 0.19 -0.1 218,323 - SM_b20211 0.19 -0.8 218,323 - SM_b20211 0.19 -1.0 218,326 + SM_b20211 0.20 -0.2 218,326 + SM_b20211 0.20 -0.4 218,327 - SM_b20211 0.20 +0.1 218,327 - SM_b20211 0.20 +0.1 218,341 + SM_b20211 0.21 -0.3 218,347 + SM_b20211 0.22 -0.3 218,348 - SM_b20211 0.22 +0.7 218,757 + SM_b20211 0.66 +2.5 218,757 + SM_b20211 0.66 -0.8 218,758 - SM_b20211 0.66 -0.3 218,758 - SM_b20211 0.66 -0.6 218,758 - SM_b20211 0.66 -0.3 218,881 + SM_b20211 0.79 +0.3 218,882 - SM_b20211 0.79 -1.2 219,074 + -1.2 219,190 - +1.7 219,191 + -0.2 219,210 + -0.5 219,219 + +2.0 219,359 - SM_b20212 0.14 -0.4 219,361 + SM_b20212 0.15 +0.4 219,362 - SM_b20212 0.15 -0.6 219,362 - SM_b20212 0.15 -0.3 219,362 - SM_b20212 0.15 -1.1 219,514 - SM_b20212 0.37 -1.0 219,524 + SM_b20212 0.38 -0.9 219,524 + SM_b20212 0.38 -0.0 219,525 - SM_b20212 0.39 -0.6 219,562 + SM_b20212 0.44 +0.7 219,563 - SM_b20212 0.44 +0.8 219,634 + SM_b20212 0.55 -0.1 219,635 - SM_b20212 0.55 +0.2 219,826 + SM_b20212 0.83 -0.6 219,940 + -0.2 219,971 - +0.4
Or see this region's nucleotide sequence