Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20148

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20147 and SM_b20148 are separated by 224 nucleotidesSM_b20148 and SM_b20149 are separated by 3 nucleotides SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461 _b20147 SM_b20148: SM_b20148 - transcriptional regulator, at 163,686 to 164,387 _b20148 SM_b20149: SM_b20149 - hypothetical protein, at 164,391 to 165,422 _b20149 Position (kb) 163 164 165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 162.862 kb on + strand, within SM_b20147at 162.862 kb on + strand, within SM_b20147at 162.862 kb on + strand, within SM_b20147at 162.949 kb on - strand, within SM_b20147at 162.949 kb on - strand, within SM_b20147at 162.998 kb on - strand, within SM_b20147at 163.063 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.314 kb on - strand, within SM_b20147at 163.459 kb on + strandat 163.627 kb on + strandat 163.628 kb on - strandat 163.687 kb on + strandat 163.906 kb on + strand, within SM_b20148at 163.907 kb on - strand, within SM_b20148at 164.092 kb on + strand, within SM_b20148at 164.093 kb on - strand, within SM_b20148at 164.093 kb on - strand, within SM_b20148at 164.191 kb on + strand, within SM_b20148at 164.220 kb on + strand, within SM_b20148at 164.220 kb on + strand, within SM_b20148at 164.220 kb on + strand, within SM_b20148at 164.248 kb on - strand, within SM_b20148at 164.393 kb on - strandat 164.409 kb on + strandat 164.410 kb on - strandat 164.471 kb on + strandat 164.471 kb on + strandat 164.472 kb on - strandat 164.472 kb on - strandat 164.472 kb on - strandat 164.472 kb on - strandat 164.472 kb on - strandat 164.473 kb on + strandat 164.474 kb on - strandat 164.583 kb on - strand, within SM_b20149at 164.583 kb on - strand, within SM_b20149at 164.834 kb on + strand, within SM_b20149at 164.834 kb on + strand, within SM_b20149at 164.835 kb on - strand, within SM_b20149at 164.835 kb on - strand, within SM_b20149at 165.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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162,862 + SM_b20147 0.46 +0.4
162,862 + SM_b20147 0.46 +0.0
162,862 + SM_b20147 0.46 +0.5
162,949 - SM_b20147 0.54 +0.0
162,949 - SM_b20147 0.54 +1.1
162,998 - SM_b20147 0.58 +0.2
163,063 + SM_b20147 0.64 -0.1
163,313 + SM_b20147 0.87 -0.1
163,313 + SM_b20147 0.87 -0.1
163,313 + SM_b20147 0.87 -1.2
163,313 + SM_b20147 0.87 -0.7
163,314 - SM_b20147 0.87 +0.3
163,459 + -0.4
163,627 + +1.0
163,628 - +1.5
163,687 + -0.1
163,906 + SM_b20148 0.31 -0.1
163,907 - SM_b20148 0.31 -1.7
164,092 + SM_b20148 0.58 -2.8
164,093 - SM_b20148 0.58 -1.6
164,093 - SM_b20148 0.58 -3.8
164,191 + SM_b20148 0.72 -1.6
164,220 + SM_b20148 0.76 -1.5
164,220 + SM_b20148 0.76 -0.1
164,220 + SM_b20148 0.76 -0.5
164,248 - SM_b20148 0.80 +1.0
164,393 - -1.1
164,409 + -2.2
164,410 - -0.5
164,471 + +0.7
164,471 + +0.1
164,472 - -0.2
164,472 - -0.3
164,472 - +0.6
164,472 - -1.4
164,472 - +0.1
164,473 + +0.2
164,474 - -0.6
164,583 - SM_b20149 0.19 +2.9
164,583 - SM_b20149 0.19 -0.7
164,834 + SM_b20149 0.43 -0.9
164,834 + SM_b20149 0.43 -0.6
164,835 - SM_b20149 0.43 -0.2
164,835 - SM_b20149 0.43 -0.1
165,348 - -0.4

Or see this region's nucleotide sequence