Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24585 and BWI76_RS24590 are separated by 357 nucleotides BWI76_RS24590 and BWI76_RS24595 overlap by 4 nucleotides BWI76_RS24595 and BWI76_RS24600 are separated by 10 nucleotides BWI76_RS24600 and BWI76_RS24605 are separated by 10 nucleotides
BWI76_RS24585: BWI76_RS24585 - glycerol dehydrogenase, at 5,124,712 to 5,125,809
_RS24585
BWI76_RS24590: BWI76_RS24590 - hypothetical protein, at 5,126,167 to 5,126,409
_RS24590
BWI76_RS24595: BWI76_RS24595 - dihydroxyacetone kinase subunit DhaK, at 5,126,406 to 5,127,476
_RS24595
BWI76_RS24600: BWI76_RS24600 - dihydroxyacetone kinase, at 5,127,487 to 5,128,119
_RS24600
BWI76_RS24605: BWI76_RS24605 - dihydroxyacetone kinase subunit DhaM, at 5,128,130 to 5,129,551
_RS24605
Position (kb) 5126
5127
5128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5125.429 kb on - strand, within BWI76_RS24585 at 5125.438 kb on + strand, within BWI76_RS24585 at 5125.467 kb on + strand, within BWI76_RS24585 at 5125.649 kb on - strand, within BWI76_RS24585 at 5125.704 kb on - strand at 5125.826 kb on - strand at 5125.829 kb on + strand at 5125.920 kb on + strand at 5126.439 kb on - strand at 5126.450 kb on + strand at 5126.725 kb on - strand, within BWI76_RS24595 at 5126.783 kb on + strand, within BWI76_RS24595 at 5126.855 kb on + strand, within BWI76_RS24595 at 5126.976 kb on - strand, within BWI76_RS24595 at 5127.021 kb on - strand, within BWI76_RS24595 at 5127.184 kb on - strand, within BWI76_RS24595 at 5127.384 kb on - strand at 5127.401 kb on + strand at 5127.444 kb on + strand at 5127.444 kb on + strand at 5127.452 kb on - strand at 5127.456 kb on + strand at 5127.456 kb on + strand at 5127.464 kb on - strand at 5127.464 kb on - strand at 5127.526 kb on - strand at 5127.624 kb on + strand, within BWI76_RS24600 at 5127.940 kb on - strand, within BWI76_RS24600 at 5128.013 kb on - strand, within BWI76_RS24600 at 5128.087 kb on + strand at 5128.266 kb on + strand at 5128.357 kb on - strand, within BWI76_RS24605 at 5128.375 kb on + strand, within BWI76_RS24605 at 5128.419 kb on - strand, within BWI76_RS24605 at 5128.437 kb on - strand, within BWI76_RS24605
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,125,429 - BWI76_RS24585 0.65 +0.6 5,125,438 + BWI76_RS24585 0.66 +2.1 5,125,467 + BWI76_RS24585 0.69 -0.5 5,125,649 - BWI76_RS24585 0.85 +0.0 5,125,704 - +0.1 5,125,826 - -1.7 5,125,829 + -1.5 5,125,920 + -0.6 5,126,439 - -1.2 5,126,450 + -3.5 5,126,725 - BWI76_RS24595 0.30 -1.9 5,126,783 + BWI76_RS24595 0.35 -1.3 5,126,855 + BWI76_RS24595 0.42 -2.7 5,126,976 - BWI76_RS24595 0.53 -0.7 5,127,021 - BWI76_RS24595 0.57 -2.4 5,127,184 - BWI76_RS24595 0.73 -1.2 5,127,384 - -0.5 5,127,401 + -0.5 5,127,444 + -1.2 5,127,444 + -0.1 5,127,452 - -1.5 5,127,456 + -1.3 5,127,456 + +0.6 5,127,464 - -0.4 5,127,464 - +1.1 5,127,526 - -0.9 5,127,624 + BWI76_RS24600 0.22 -0.0 5,127,940 - BWI76_RS24600 0.72 -0.5 5,128,013 - BWI76_RS24600 0.83 -2.4 5,128,087 + +0.2 5,128,266 + +0.1 5,128,357 - BWI76_RS24605 0.16 -0.9 5,128,375 + BWI76_RS24605 0.17 -1.5 5,128,419 - BWI76_RS24605 0.20 -0.9 5,128,437 - BWI76_RS24605 0.22 -2.7
Or see this region's nucleotide sequence