Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09850 and BWI76_RS09855 overlap by 64 nucleotides BWI76_RS09855 and BWI76_RS09860 are separated by 149 nucleotides BWI76_RS09860 and BWI76_RS09865 are separated by 13 nucleotides BWI76_RS09865 and BWI76_RS09870 are separated by 60 nucleotides
BWI76_RS09850: BWI76_RS09850 - L,D-transpeptidase, at 2,069,449 to 2,071,242
_RS09850
BWI76_RS09855: BWI76_RS09855 - hypothetical protein, at 2,071,179 to 2,071,393
_RS09855
BWI76_RS09860: BWI76_RS09860 - hypothetical protein, at 2,071,543 to 2,072,094
_RS09860
BWI76_RS09865: BWI76_RS09865 - MBL fold hydrolase, at 2,072,108 to 2,072,755
_RS09865
BWI76_RS09870: BWI76_RS09870 - aromatic amino acid aminotransferase, at 2,072,816 to 2,074,006
_RS09870
Position (kb)
2072
2073 Strain fitness (log2 ratio)
-1
0
1 at 2071.332 kb on + strand, within BWI76_RS09855 at 2071.433 kb on + strand at 2071.455 kb on + strand at 2071.455 kb on + strand at 2071.478 kb on + strand at 2071.818 kb on + strand, within BWI76_RS09860 at 2071.818 kb on + strand, within BWI76_RS09860 at 2071.826 kb on - strand, within BWI76_RS09860 at 2071.826 kb on - strand, within BWI76_RS09860 at 2072.025 kb on - strand, within BWI76_RS09860 at 2072.244 kb on + strand, within BWI76_RS09865 at 2072.262 kb on - strand, within BWI76_RS09865 at 2072.312 kb on + strand, within BWI76_RS09865 at 2072.317 kb on + strand, within BWI76_RS09865 at 2072.317 kb on + strand, within BWI76_RS09865 at 2072.317 kb on + strand, within BWI76_RS09865 at 2072.325 kb on - strand, within BWI76_RS09865 at 2073.464 kb on - strand, within BWI76_RS09870 at 2073.577 kb on + strand, within BWI76_RS09870 at 2073.605 kb on + strand, within BWI76_RS09870
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,071,332 + BWI76_RS09855 0.71 -1.0 2,071,433 + +0.2 2,071,455 + -0.4 2,071,455 + -0.5 2,071,478 + +0.5 2,071,818 + BWI76_RS09860 0.50 -1.4 2,071,818 + BWI76_RS09860 0.50 +0.2 2,071,826 - BWI76_RS09860 0.51 -1.6 2,071,826 - BWI76_RS09860 0.51 +1.2 2,072,025 - BWI76_RS09860 0.87 +0.5 2,072,244 + BWI76_RS09865 0.21 +0.6 2,072,262 - BWI76_RS09865 0.24 +1.0 2,072,312 + BWI76_RS09865 0.31 +0.9 2,072,317 + BWI76_RS09865 0.32 +0.3 2,072,317 + BWI76_RS09865 0.32 +0.9 2,072,317 + BWI76_RS09865 0.32 +0.0 2,072,325 - BWI76_RS09865 0.33 +1.3 2,073,464 - BWI76_RS09870 0.54 -0.2 2,073,577 + BWI76_RS09870 0.64 -0.4 2,073,605 + BWI76_RS09870 0.66 -1.1
Or see this region's nucleotide sequence