Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09755 and BWI76_RS09760 are separated by 72 nucleotides BWI76_RS09760 and BWI76_RS09765 are separated by 147 nucleotides BWI76_RS09765 and BWI76_RS09770 overlap by 54 nucleotides
BWI76_RS09755: BWI76_RS09755 - phosphoserine transaminase, at 2,046,155 to 2,047,243
_RS09755
BWI76_RS09760: BWI76_RS09760 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,047,316 to 2,048,599
_RS09760
BWI76_RS09765: BWI76_RS09765 - metalloprotease, at 2,048,747 to 2,049,514
_RS09765
BWI76_RS09770: BWI76_RS09770 - hypothetical protein, at 2,049,461 to 2,049,753
_RS09770
Position (kb)
2047
2048
2049 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2046.342 kb on - strand, within BWI76_RS09755 at 2046.471 kb on + strand, within BWI76_RS09755 at 2046.808 kb on - strand, within BWI76_RS09755 at 2046.851 kb on + strand, within BWI76_RS09755 at 2046.910 kb on - strand, within BWI76_RS09755 at 2046.910 kb on - strand, within BWI76_RS09755 at 2046.931 kb on + strand, within BWI76_RS09755 at 2046.972 kb on - strand, within BWI76_RS09755 at 2047.428 kb on + strand at 2048.002 kb on + strand, within BWI76_RS09760 at 2048.002 kb on + strand, within BWI76_RS09760 at 2048.002 kb on + strand, within BWI76_RS09760 at 2048.119 kb on - strand, within BWI76_RS09760 at 2048.366 kb on + strand, within BWI76_RS09760 at 2048.434 kb on + strand, within BWI76_RS09760 at 2048.593 kb on + strand at 2048.593 kb on + strand at 2048.837 kb on - strand, within BWI76_RS09765 at 2049.152 kb on - strand, within BWI76_RS09765
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,046,342 - BWI76_RS09755 0.17 -0.0 2,046,471 + BWI76_RS09755 0.29 +1.0 2,046,808 - BWI76_RS09755 0.60 -1.3 2,046,851 + BWI76_RS09755 0.64 -0.0 2,046,910 - BWI76_RS09755 0.69 -1.3 2,046,910 - BWI76_RS09755 0.69 -2.2 2,046,931 + BWI76_RS09755 0.71 -2.4 2,046,972 - BWI76_RS09755 0.75 -0.6 2,047,428 + -1.0 2,048,002 + BWI76_RS09760 0.53 -0.0 2,048,002 + BWI76_RS09760 0.53 -0.6 2,048,002 + BWI76_RS09760 0.53 -3.8 2,048,119 - BWI76_RS09760 0.63 -1.0 2,048,366 + BWI76_RS09760 0.82 -2.5 2,048,434 + BWI76_RS09760 0.87 -1.2 2,048,593 + -1.2 2,048,593 + -1.5 2,048,837 - BWI76_RS09765 0.12 -0.0 2,049,152 - BWI76_RS09765 0.53 +0.0
Or see this region's nucleotide sequence