Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04835 and BWI76_RS04840 are separated by 10 nucleotides BWI76_RS04840 and BWI76_RS04845 are separated by 183 nucleotides
BWI76_RS04835: BWI76_RS04835 - type II secretion system protein GspE, at 1,010,005 to 1,011,390
_RS04835
BWI76_RS04840: BWI76_RS04840 - prepilin peptidase-dependent pilin, at 1,011,401 to 1,011,832
_RS04840
BWI76_RS04845: BWI76_RS04845 - nicotinate-nucleotide pyrophosphorylase, at 1,012,016 to 1,012,909
_RS04845
Position (kb)
1011
1012 Strain fitness (log2 ratio)
-2
-1
0
1 at 1010.591 kb on + strand, within BWI76_RS04835 at 1010.797 kb on - strand, within BWI76_RS04835 at 1010.836 kb on - strand, within BWI76_RS04835 at 1011.154 kb on + strand, within BWI76_RS04835 at 1011.270 kb on + strand at 1011.506 kb on - strand, within BWI76_RS04840 at 1011.553 kb on + strand, within BWI76_RS04840 at 1011.670 kb on + strand, within BWI76_RS04840 at 1011.698 kb on + strand, within BWI76_RS04840 at 1011.706 kb on - strand, within BWI76_RS04840 at 1011.808 kb on + strand at 1011.808 kb on + strand at 1012.036 kb on + strand at 1012.100 kb on - strand at 1012.194 kb on - strand, within BWI76_RS04845 at 1012.418 kb on + strand, within BWI76_RS04845 at 1012.426 kb on - strand, within BWI76_RS04845 at 1012.802 kb on + strand, within BWI76_RS04845 at 1012.802 kb on + strand, within BWI76_RS04845 at 1012.810 kb on - strand, within BWI76_RS04845
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,010,591 + BWI76_RS04835 0.42 +0.1 1,010,797 - BWI76_RS04835 0.57 +0.1 1,010,836 - BWI76_RS04835 0.60 -2.5 1,011,154 + BWI76_RS04835 0.83 -0.5 1,011,270 + -0.5 1,011,506 - BWI76_RS04840 0.24 +0.6 1,011,553 + BWI76_RS04840 0.35 +0.6 1,011,670 + BWI76_RS04840 0.62 +0.6 1,011,698 + BWI76_RS04840 0.69 +1.4 1,011,706 - BWI76_RS04840 0.71 -1.5 1,011,808 + -1.6 1,011,808 + -0.5 1,012,036 + -1.3 1,012,100 - -1.0 1,012,194 - BWI76_RS04845 0.20 -0.6 1,012,418 + BWI76_RS04845 0.45 -1.1 1,012,426 - BWI76_RS04845 0.46 -1.2 1,012,802 + BWI76_RS04845 0.88 -1.6 1,012,802 + BWI76_RS04845 0.88 -2.0 1,012,810 - BWI76_RS04845 0.89 -2.2
Or see this region's nucleotide sequence