Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04640 and BWI76_RS04645 are separated by 37 nucleotides BWI76_RS04645 and BWI76_RS04650 are separated by 33 nucleotides
BWI76_RS04640: BWI76_RS04640 - LysR family transcriptional regulator, at 966,808 to 967,704
_RS04640
BWI76_RS04645: BWI76_RS04645 - 3-dehydroquinase, at 967,742 to 968,497
_RS04645
BWI76_RS04650: BWI76_RS04650 - MFS transporter, at 968,531 to 969,745
_RS04650
Position (kb) 967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 966.748 kb on - strand at 966.843 kb on + strand at 966.843 kb on + strand at 966.851 kb on - strand at 966.851 kb on - strand at 966.851 kb on - strand at 966.855 kb on + strand at 966.861 kb on + strand at 966.863 kb on - strand at 966.863 kb on - strand at 966.872 kb on + strand at 966.873 kb on - strand at 966.897 kb on + strand at 966.898 kb on + strand, within BWI76_RS04640 at 966.931 kb on + strand at 966.950 kb on + strand, within BWI76_RS04640 at 966.951 kb on - strand at 966.958 kb on - strand, within BWI76_RS04640 at 966.974 kb on + strand, within BWI76_RS04640 at 966.974 kb on + strand, within BWI76_RS04640 at 966.974 kb on + strand, within BWI76_RS04640 at 966.982 kb on - strand, within BWI76_RS04640 at 966.988 kb on + strand, within BWI76_RS04640 at 966.988 kb on + strand, within BWI76_RS04640 at 966.988 kb on + strand, within BWI76_RS04640 at 967.005 kb on - strand, within BWI76_RS04640 at 967.026 kb on - strand, within BWI76_RS04640 at 967.181 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.191 kb on + strand, within BWI76_RS04640 at 967.194 kb on - strand, within BWI76_RS04640 at 967.198 kb on + strand, within BWI76_RS04640 at 967.198 kb on + strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.199 kb on - strand, within BWI76_RS04640 at 967.218 kb on + strand, within BWI76_RS04640 at 967.223 kb on + strand, within BWI76_RS04640 at 967.311 kb on - strand, within BWI76_RS04640 at 967.324 kb on + strand, within BWI76_RS04640 at 967.332 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.338 kb on + strand, within BWI76_RS04640 at 967.341 kb on - strand at 967.346 kb on - strand, within BWI76_RS04640 at 967.346 kb on - strand, within BWI76_RS04640 at 967.346 kb on - strand, within BWI76_RS04640 at 967.346 kb on - strand, within BWI76_RS04640 at 967.346 kb on - strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.368 kb on + strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.376 kb on - strand, within BWI76_RS04640 at 967.384 kb on - strand, within BWI76_RS04640 at 967.399 kb on - strand, within BWI76_RS04640 at 967.415 kb on + strand, within BWI76_RS04640 at 967.447 kb on - strand, within BWI76_RS04640 at 967.447 kb on - strand, within BWI76_RS04640 at 967.483 kb on + strand, within BWI76_RS04640 at 967.483 kb on + strand, within BWI76_RS04640 at 967.483 kb on + strand, within BWI76_RS04640 at 967.483 kb on + strand, within BWI76_RS04640 at 967.483 kb on + strand, within BWI76_RS04640 at 967.486 kb on - strand, within BWI76_RS04640 at 967.488 kb on + strand, within BWI76_RS04640 at 967.488 kb on + strand, within BWI76_RS04640 at 967.491 kb on - strand, within BWI76_RS04640 at 967.491 kb on - strand, within BWI76_RS04640 at 967.496 kb on - strand, within BWI76_RS04640 at 967.504 kb on + strand, within BWI76_RS04640 at 967.509 kb on + strand, within BWI76_RS04640 at 967.509 kb on + strand, within BWI76_RS04640 at 967.509 kb on + strand, within BWI76_RS04640 at 967.509 kb on + strand, within BWI76_RS04640 at 967.512 kb on - strand, within BWI76_RS04640 at 967.512 kb on - strand, within BWI76_RS04640 at 967.514 kb on + strand at 967.514 kb on + strand, within BWI76_RS04640 at 967.514 kb on + strand, within BWI76_RS04640 at 967.514 kb on + strand, within BWI76_RS04640 at 967.517 kb on - strand, within BWI76_RS04640 at 967.517 kb on - strand, within BWI76_RS04640 at 967.517 kb on - strand, within BWI76_RS04640 at 967.517 kb on - strand, within BWI76_RS04640 at 967.517 kb on - strand, within BWI76_RS04640 at 967.519 kb on + strand, within BWI76_RS04640 at 967.522 kb on - strand, within BWI76_RS04640 at 967.571 kb on + strand, within BWI76_RS04640 at 967.610 kb on + strand, within BWI76_RS04640 at 967.633 kb on - strand at 967.644 kb on + strand at 967.716 kb on + strand at 967.719 kb on - strand at 967.719 kb on - strand at 967.719 kb on - strand at 967.725 kb on - strand at 967.802 kb on + strand at 967.817 kb on + strand at 967.954 kb on - strand, within BWI76_RS04645 at 967.954 kb on - strand, within BWI76_RS04645 at 967.993 kb on + strand, within BWI76_RS04645 at 968.047 kb on - strand, within BWI76_RS04645 at 968.083 kb on - strand, within BWI76_RS04645 at 968.114 kb on - strand, within BWI76_RS04645 at 968.154 kb on - strand, within BWI76_RS04645 at 968.174 kb on + strand, within BWI76_RS04645 at 968.333 kb on - strand, within BWI76_RS04645 at 968.426 kb on + strand at 968.481 kb on - strand at 968.738 kb on + strand, within BWI76_RS04650 at 968.770 kb on - strand, within BWI76_RS04650 at 968.794 kb on - strand, within BWI76_RS04650 at 968.818 kb on - strand, within BWI76_RS04650 at 968.990 kb on - strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.108 kb on - strand, within BWI76_RS04650 at 969.137 kb on - strand, within BWI76_RS04650 at 969.272 kb on + strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.352 kb on + strand, within BWI76_RS04650
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 966,748 - +2.7 966,843 + +0.7 966,843 + +0.1 966,851 - -0.1 966,851 - +1.1 966,851 - -0.8 966,855 + +0.1 966,861 + -0.5 966,863 - -0.1 966,863 - +1.1 966,872 + +0.2 966,873 - -0.5 966,897 + +1.1 966,898 + BWI76_RS04640 0.10 -1.6 966,931 + +1.1 966,950 + BWI76_RS04640 0.16 +0.9 966,951 - +1.1 966,958 - BWI76_RS04640 0.17 +0.5 966,974 + BWI76_RS04640 0.19 -1.1 966,974 + BWI76_RS04640 0.19 -0.1 966,974 + BWI76_RS04640 0.19 +0.1 966,982 - BWI76_RS04640 0.19 +0.1 966,988 + BWI76_RS04640 0.20 +0.1 966,988 + BWI76_RS04640 0.20 -0.1 966,988 + BWI76_RS04640 0.20 +0.5 967,005 - BWI76_RS04640 0.22 -0.9 967,026 - BWI76_RS04640 0.24 -0.1 967,181 + BWI76_RS04640 0.42 -1.2 967,191 + BWI76_RS04640 0.43 -0.3 967,191 + BWI76_RS04640 0.43 -0.9 967,191 + BWI76_RS04640 0.43 -1.4 967,191 + BWI76_RS04640 0.43 +1.1 967,191 + BWI76_RS04640 0.43 +0.1 967,191 + BWI76_RS04640 0.43 +1.2 967,191 + BWI76_RS04640 0.43 -0.5 967,191 + BWI76_RS04640 0.43 -2.4 967,191 + BWI76_RS04640 0.43 +0.3 967,191 + BWI76_RS04640 0.43 -1.9 967,191 + BWI76_RS04640 0.43 -0.9 967,191 + BWI76_RS04640 0.43 -0.0 967,191 + BWI76_RS04640 0.43 -1.2 967,191 + BWI76_RS04640 0.43 -0.1 967,191 + BWI76_RS04640 0.43 -0.2 967,191 + BWI76_RS04640 0.43 -0.5 967,191 + BWI76_RS04640 0.43 -1.4 967,191 + BWI76_RS04640 0.43 +0.3 967,191 + BWI76_RS04640 0.43 -0.1 967,191 + BWI76_RS04640 0.43 +0.6 967,191 + BWI76_RS04640 0.43 -1.0 967,191 + BWI76_RS04640 0.43 -0.5 967,191 + BWI76_RS04640 0.43 -1.2 967,191 + BWI76_RS04640 0.43 -0.5 967,191 + BWI76_RS04640 0.43 -0.5 967,191 + BWI76_RS04640 0.43 +1.1 967,191 + BWI76_RS04640 0.43 -1.3 967,191 + BWI76_RS04640 0.43 -0.2 967,194 - BWI76_RS04640 0.43 +0.1 967,198 + BWI76_RS04640 0.43 -0.2 967,198 + BWI76_RS04640 0.43 +0.1 967,199 - BWI76_RS04640 0.44 +0.1 967,199 - BWI76_RS04640 0.44 -1.7 967,199 - BWI76_RS04640 0.44 -1.2 967,199 - BWI76_RS04640 0.44 +1.1 967,199 - BWI76_RS04640 0.44 -1.7 967,199 - BWI76_RS04640 0.44 -0.2 967,199 - BWI76_RS04640 0.44 +0.0 967,199 - BWI76_RS04640 0.44 +0.9 967,199 - BWI76_RS04640 0.44 +0.4 967,199 - BWI76_RS04640 0.44 -0.9 967,199 - BWI76_RS04640 0.44 -1.2 967,199 - BWI76_RS04640 0.44 -0.5 967,199 - BWI76_RS04640 0.44 -0.8 967,218 + BWI76_RS04640 0.46 -2.5 967,223 + BWI76_RS04640 0.46 -0.4 967,311 - BWI76_RS04640 0.56 -0.9 967,324 + BWI76_RS04640 0.58 -1.9 967,332 + BWI76_RS04640 0.58 -2.0 967,338 + BWI76_RS04640 0.59 -1.8 967,338 + BWI76_RS04640 0.59 -0.5 967,338 + BWI76_RS04640 0.59 +1.1 967,338 + BWI76_RS04640 0.59 -0.7 967,338 + BWI76_RS04640 0.59 +0.2 967,338 + BWI76_RS04640 0.59 -0.5 967,338 + BWI76_RS04640 0.59 -0.3 967,338 + BWI76_RS04640 0.59 -0.1 967,338 + BWI76_RS04640 0.59 -0.4 967,338 + BWI76_RS04640 0.59 +2.1 967,341 - -0.9 967,346 - BWI76_RS04640 0.60 -1.2 967,346 - BWI76_RS04640 0.60 -2.1 967,346 - BWI76_RS04640 0.60 -0.5 967,346 - BWI76_RS04640 0.60 -2.7 967,346 - BWI76_RS04640 0.60 -0.5 967,368 + BWI76_RS04640 0.62 -0.4 967,368 + BWI76_RS04640 0.62 +0.2 967,368 + BWI76_RS04640 0.62 -0.4 967,368 + BWI76_RS04640 0.62 -1.7 967,368 + BWI76_RS04640 0.62 +0.8 967,368 + BWI76_RS04640 0.62 -0.2 967,368 + BWI76_RS04640 0.62 -0.1 967,368 + BWI76_RS04640 0.62 -2.0 967,368 + BWI76_RS04640 0.62 -0.5 967,368 + BWI76_RS04640 0.62 -0.5 967,368 + BWI76_RS04640 0.62 -1.6 967,368 + BWI76_RS04640 0.62 -0.1 967,368 + BWI76_RS04640 0.62 -2.5 967,368 + BWI76_RS04640 0.62 -0.6 967,368 + BWI76_RS04640 0.62 +0.2 967,368 + BWI76_RS04640 0.62 +0.1 967,368 + BWI76_RS04640 0.62 +1.1 967,376 - BWI76_RS04640 0.63 -0.5 967,376 - BWI76_RS04640 0.63 +0.1 967,376 - BWI76_RS04640 0.63 -1.0 967,376 - BWI76_RS04640 0.63 -1.5 967,376 - BWI76_RS04640 0.63 -1.0 967,376 - BWI76_RS04640 0.63 -0.2 967,376 - BWI76_RS04640 0.63 +2.1 967,376 - BWI76_RS04640 0.63 -0.9 967,384 - BWI76_RS04640 0.64 -3.2 967,399 - BWI76_RS04640 0.66 -1.1 967,415 + BWI76_RS04640 0.68 -1.7 967,447 - BWI76_RS04640 0.71 -0.4 967,447 - BWI76_RS04640 0.71 -0.5 967,483 + BWI76_RS04640 0.75 -1.5 967,483 + BWI76_RS04640 0.75 +1.7 967,483 + BWI76_RS04640 0.75 +0.7 967,483 + BWI76_RS04640 0.75 +0.1 967,483 + BWI76_RS04640 0.75 +2.1 967,486 - BWI76_RS04640 0.76 -0.4 967,488 + BWI76_RS04640 0.76 +0.5 967,488 + BWI76_RS04640 0.76 +0.7 967,491 - BWI76_RS04640 0.76 -0.6 967,491 - BWI76_RS04640 0.76 +0.2 967,496 - BWI76_RS04640 0.77 -1.5 967,504 + BWI76_RS04640 0.78 -0.5 967,509 + BWI76_RS04640 0.78 -0.6 967,509 + BWI76_RS04640 0.78 +0.1 967,509 + BWI76_RS04640 0.78 -0.1 967,509 + BWI76_RS04640 0.78 +0.5 967,512 - BWI76_RS04640 0.78 -1.3 967,512 - BWI76_RS04640 0.78 +0.1 967,514 + -1.5 967,514 + BWI76_RS04640 0.79 -1.0 967,514 + BWI76_RS04640 0.79 -0.2 967,514 + BWI76_RS04640 0.79 -1.7 967,517 - BWI76_RS04640 0.79 +1.3 967,517 - BWI76_RS04640 0.79 +0.3 967,517 - BWI76_RS04640 0.79 -1.7 967,517 - BWI76_RS04640 0.79 -0.1 967,517 - BWI76_RS04640 0.79 -0.8 967,519 + BWI76_RS04640 0.79 +0.1 967,522 - BWI76_RS04640 0.80 -2.4 967,571 + BWI76_RS04640 0.85 -0.3 967,610 + BWI76_RS04640 0.89 -0.5 967,633 - +0.1 967,644 + -0.1 967,716 + -0.5 967,719 - +1.0 967,719 - -1.9 967,719 - -0.6 967,725 - +0.1 967,802 + +1.1 967,817 + +0.1 967,954 - BWI76_RS04645 0.28 -0.5 967,954 - BWI76_RS04645 0.28 +0.1 967,993 + BWI76_RS04645 0.33 -0.1 968,047 - BWI76_RS04645 0.40 -2.1 968,083 - BWI76_RS04645 0.45 -1.5 968,114 - BWI76_RS04645 0.49 -2.2 968,154 - BWI76_RS04645 0.54 -2.2 968,174 + BWI76_RS04645 0.57 +0.1 968,333 - BWI76_RS04645 0.78 -0.9 968,426 + +1.1 968,481 - -0.9 968,738 + BWI76_RS04650 0.17 -0.5 968,770 - BWI76_RS04650 0.20 +0.4 968,794 - BWI76_RS04650 0.22 -0.5 968,818 - BWI76_RS04650 0.24 +0.4 968,990 - BWI76_RS04650 0.38 +0.1 969,100 + BWI76_RS04650 0.47 -1.2 969,100 + BWI76_RS04650 0.47 +0.2 969,108 - BWI76_RS04650 0.47 +0.2 969,137 - BWI76_RS04650 0.50 -0.6 969,272 + BWI76_RS04650 0.61 +0.9 969,347 - BWI76_RS04650 0.67 +0.3 969,347 - BWI76_RS04650 0.67 +2.5 969,347 - BWI76_RS04650 0.67 -1.2 969,352 + BWI76_RS04650 0.68 +0.8
Or see this region's nucleotide sequence