Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03370 and BWI76_RS03375 are separated by 114 nucleotides BWI76_RS03375 and BWI76_RS03380 are separated by 179 nucleotides
BWI76_RS03370: BWI76_RS03370 - type I restriction-modification system subunit S, at 694,751 to 696,202
_RS03370
BWI76_RS03375: BWI76_RS03375 - transcriptional regulator, at 696,317 to 696,595
_RS03375
BWI76_RS03380: BWI76_RS03380 - hypothetical protein, at 696,775 to 697,692
_RS03380
Position (kb) 696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.327 kb on - strand, within BWI76_RS03370 at 695.354 kb on + strand, within BWI76_RS03370 at 695.355 kb on - strand, within BWI76_RS03370 at 695.355 kb on - strand, within BWI76_RS03370 at 695.361 kb on + strand, within BWI76_RS03370 at 695.407 kb on - strand, within BWI76_RS03370 at 695.409 kb on - strand, within BWI76_RS03370 at 695.412 kb on + strand, within BWI76_RS03370 at 695.412 kb on + strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.432 kb on - strand, within BWI76_RS03370 at 695.442 kb on - strand, within BWI76_RS03370 at 695.447 kb on - strand, within BWI76_RS03370 at 695.449 kb on + strand, within BWI76_RS03370 at 695.450 kb on + strand, within BWI76_RS03370 at 695.479 kb on - strand, within BWI76_RS03370 at 695.499 kb on + strand, within BWI76_RS03370 at 695.511 kb on - strand, within BWI76_RS03370 at 695.539 kb on - strand, within BWI76_RS03370 at 695.593 kb on - strand, within BWI76_RS03370 at 695.679 kb on + strand, within BWI76_RS03370 at 695.734 kb on + strand, within BWI76_RS03370 at 695.772 kb on - strand, within BWI76_RS03370 at 695.918 kb on + strand, within BWI76_RS03370 at 696.084 kb on + strand at 696.084 kb on + strand at 696.084 kb on + strand at 696.084 kb on + strand at 696.091 kb on + strand at 696.092 kb on - strand at 696.096 kb on + strand at 696.098 kb on + strand at 696.098 kb on + strand at 696.098 kb on + strand at 696.098 kb on + strand at 696.098 kb on + strand at 696.127 kb on + strand at 696.195 kb on + strand at 696.372 kb on - strand, within BWI76_RS03375 at 696.372 kb on - strand, within BWI76_RS03375 at 696.372 kb on - strand, within BWI76_RS03375 at 696.372 kb on - strand, within BWI76_RS03375 at 696.372 kb on - strand, within BWI76_RS03375 at 696.372 kb on - strand, within BWI76_RS03375 at 696.422 kb on + strand, within BWI76_RS03375 at 696.422 kb on + strand, within BWI76_RS03375 at 696.422 kb on + strand at 696.423 kb on + strand, within BWI76_RS03375 at 696.423 kb on + strand, within BWI76_RS03375 at 696.423 kb on + strand, within BWI76_RS03375 at 696.423 kb on + strand, within BWI76_RS03375 at 696.430 kb on - strand, within BWI76_RS03375 at 696.430 kb on - strand, within BWI76_RS03375 at 696.430 kb on - strand, within BWI76_RS03375 at 696.430 kb on - strand, within BWI76_RS03375 at 696.430 kb on - strand, within BWI76_RS03375 at 696.430 kb on - strand, within BWI76_RS03375 at 696.431 kb on - strand, within BWI76_RS03375 at 696.431 kb on - strand, within BWI76_RS03375 at 696.431 kb on - strand, within BWI76_RS03375 at 696.431 kb on - strand, within BWI76_RS03375 at 696.431 kb on - strand, within BWI76_RS03375 at 696.431 kb on - strand, within BWI76_RS03375 at 696.448 kb on - strand, within BWI76_RS03375 at 696.456 kb on + strand, within BWI76_RS03375 at 696.458 kb on - strand, within BWI76_RS03375 at 696.492 kb on + strand, within BWI76_RS03375 at 696.492 kb on + strand, within BWI76_RS03375 at 696.492 kb on + strand, within BWI76_RS03375 at 696.493 kb on + strand, within BWI76_RS03375 at 696.500 kb on - strand, within BWI76_RS03375 at 696.500 kb on - strand, within BWI76_RS03375 at 696.500 kb on - strand, within BWI76_RS03375 at 696.500 kb on - strand, within BWI76_RS03375 at 696.500 kb on - strand, within BWI76_RS03375 at 696.501 kb on - strand, within BWI76_RS03375 at 696.511 kb on - strand, within BWI76_RS03375 at 696.514 kb on + strand, within BWI76_RS03375 at 696.514 kb on + strand, within BWI76_RS03375 at 696.514 kb on + strand, within BWI76_RS03375 at 696.522 kb on - strand, within BWI76_RS03375 at 696.522 kb on - strand, within BWI76_RS03375 at 696.522 kb on - strand, within BWI76_RS03375 at 696.522 kb on - strand, within BWI76_RS03375 at 696.522 kb on - strand, within BWI76_RS03375 at 696.522 kb on - strand, within BWI76_RS03375 at 696.522 kb on - strand, within BWI76_RS03375 at 696.527 kb on - strand, within BWI76_RS03375 at 696.545 kb on - strand, within BWI76_RS03375 at 696.573 kb on + strand at 696.581 kb on - strand at 696.600 kb on - strand at 696.615 kb on + strand at 696.678 kb on - strand at 696.682 kb on + strand at 696.690 kb on - strand at 696.720 kb on + strand at 696.720 kb on + strand at 696.720 kb on + strand at 696.741 kb on + strand at 696.741 kb on + strand at 696.769 kb on + strand at 696.771 kb on + strand at 696.811 kb on + strand at 696.832 kb on - strand at 696.887 kb on + strand, within BWI76_RS03380 at 696.887 kb on + strand, within BWI76_RS03380 at 696.900 kb on + strand, within BWI76_RS03380 at 696.900 kb on + strand, within BWI76_RS03380 at 696.900 kb on + strand, within BWI76_RS03380 at 696.900 kb on + strand, within BWI76_RS03380 at 696.900 kb on + strand, within BWI76_RS03380 at 696.908 kb on - strand, within BWI76_RS03380 at 696.908 kb on - strand, within BWI76_RS03380 at 696.908 kb on - strand, within BWI76_RS03380 at 696.908 kb on - strand, within BWI76_RS03380 at 696.921 kb on - strand, within BWI76_RS03380 at 696.929 kb on + strand, within BWI76_RS03380 at 696.931 kb on + strand, within BWI76_RS03380 at 696.938 kb on + strand, within BWI76_RS03380 at 696.938 kb on - strand, within BWI76_RS03380 at 696.939 kb on - strand, within BWI76_RS03380 at 697.012 kb on + strand, within BWI76_RS03380 at 697.020 kb on - strand, within BWI76_RS03380 at 697.039 kb on - strand, within BWI76_RS03380 at 697.052 kb on - strand, within BWI76_RS03380 at 697.088 kb on - strand, within BWI76_RS03380 at 697.095 kb on - strand, within BWI76_RS03380 at 697.254 kb on + strand, within BWI76_RS03380 at 697.531 kb on + strand, within BWI76_RS03380 at 697.531 kb on + strand, within BWI76_RS03380 at 697.539 kb on - strand, within BWI76_RS03380 at 697.539 kb on - strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.541 kb on + strand, within BWI76_RS03380 at 697.542 kb on + strand, within BWI76_RS03380 at 697.549 kb on + strand, within BWI76_RS03380 at 697.549 kb on - strand, within BWI76_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 695,321 + BWI76_RS03370 0.39 +0.2 695,321 + BWI76_RS03370 0.39 -0.1 695,321 + BWI76_RS03370 0.39 -2.1 695,321 + BWI76_RS03370 0.39 +0.3 695,321 + BWI76_RS03370 0.39 +0.1 695,321 + BWI76_RS03370 0.39 +1.2 695,321 + BWI76_RS03370 0.39 -1.1 695,321 + BWI76_RS03370 0.39 -2.6 695,321 + BWI76_RS03370 0.39 -0.9 695,321 + BWI76_RS03370 0.39 -0.0 695,321 + BWI76_RS03370 0.39 -0.7 695,321 + BWI76_RS03370 0.39 -1.6 695,321 + BWI76_RS03370 0.39 -0.3 695,321 + BWI76_RS03370 0.39 -0.0 695,321 + BWI76_RS03370 0.39 -0.2 695,321 + BWI76_RS03370 0.39 +0.0 695,321 + BWI76_RS03370 0.39 +1.2 695,321 + BWI76_RS03370 0.39 +0.4 695,321 + BWI76_RS03370 0.39 -1.0 695,321 + BWI76_RS03370 0.39 -1.8 695,321 + BWI76_RS03370 0.39 -0.4 695,321 + BWI76_RS03370 0.39 -0.6 695,321 + BWI76_RS03370 0.39 +0.2 695,321 + BWI76_RS03370 0.39 -0.6 695,321 + BWI76_RS03370 0.39 -0.5 695,327 - BWI76_RS03370 0.40 -2.1 695,354 + BWI76_RS03370 0.42 +1.2 695,355 - BWI76_RS03370 0.42 -1.8 695,355 - BWI76_RS03370 0.42 +0.3 695,361 + BWI76_RS03370 0.42 +2.2 695,407 - BWI76_RS03370 0.45 +1.1 695,409 - BWI76_RS03370 0.45 -1.8 695,412 + BWI76_RS03370 0.46 +1.2 695,412 + BWI76_RS03370 0.46 +1.2 695,420 - BWI76_RS03370 0.46 -1.1 695,420 - BWI76_RS03370 0.46 -1.1 695,420 - BWI76_RS03370 0.46 -2.1 695,420 - BWI76_RS03370 0.46 -1.1 695,420 - BWI76_RS03370 0.46 +0.2 695,420 - BWI76_RS03370 0.46 -1.2 695,432 - BWI76_RS03370 0.47 -1.6 695,442 - BWI76_RS03370 0.48 -1.6 695,447 - BWI76_RS03370 0.48 -0.5 695,449 + BWI76_RS03370 0.48 -3.1 695,450 + BWI76_RS03370 0.48 -1.8 695,479 - BWI76_RS03370 0.50 -0.4 695,499 + BWI76_RS03370 0.52 -0.6 695,511 - BWI76_RS03370 0.52 -2.0 695,539 - BWI76_RS03370 0.54 -0.7 695,593 - BWI76_RS03370 0.58 +0.2 695,679 + BWI76_RS03370 0.64 -0.4 695,734 + BWI76_RS03370 0.68 +1.2 695,772 - BWI76_RS03370 0.70 -0.8 695,918 + BWI76_RS03370 0.80 +1.2 696,084 + -0.2 696,084 + +2.2 696,084 + +0.2 696,084 + -0.8 696,091 + -1.1 696,092 - +0.2 696,096 + -0.6 696,098 + -1.8 696,098 + +1.2 696,098 + +0.2 696,098 + +2.8 696,098 + -0.6 696,127 + -0.2 696,195 + +1.2 696,372 - BWI76_RS03375 0.20 -1.3 696,372 - BWI76_RS03375 0.20 -0.8 696,372 - BWI76_RS03375 0.20 +0.2 696,372 - BWI76_RS03375 0.20 +0.2 696,372 - BWI76_RS03375 0.20 -0.2 696,372 - BWI76_RS03375 0.20 -0.8 696,422 + BWI76_RS03375 0.38 -0.6 696,422 + BWI76_RS03375 0.38 -1.6 696,422 + +0.2 696,423 + BWI76_RS03375 0.38 +1.2 696,423 + BWI76_RS03375 0.38 -2.0 696,423 + BWI76_RS03375 0.38 -0.1 696,423 + BWI76_RS03375 0.38 +0.2 696,430 - BWI76_RS03375 0.41 -1.6 696,430 - BWI76_RS03375 0.41 -0.3 696,430 - BWI76_RS03375 0.41 -2.1 696,430 - BWI76_RS03375 0.41 -1.1 696,430 - BWI76_RS03375 0.41 -1.5 696,430 - BWI76_RS03375 0.41 -2.4 696,431 - BWI76_RS03375 0.41 -0.6 696,431 - BWI76_RS03375 0.41 +0.6 696,431 - BWI76_RS03375 0.41 +1.2 696,431 - BWI76_RS03375 0.41 -0.9 696,431 - BWI76_RS03375 0.41 +1.2 696,431 - BWI76_RS03375 0.41 +0.7 696,448 - BWI76_RS03375 0.47 -0.6 696,456 + BWI76_RS03375 0.50 -1.4 696,458 - BWI76_RS03375 0.51 +1.0 696,492 + BWI76_RS03375 0.63 +0.2 696,492 + BWI76_RS03375 0.63 -1.4 696,492 + BWI76_RS03375 0.63 -0.8 696,493 + BWI76_RS03375 0.63 -1.1 696,500 - BWI76_RS03375 0.66 -0.4 696,500 - BWI76_RS03375 0.66 -1.4 696,500 - BWI76_RS03375 0.66 +1.2 696,500 - BWI76_RS03375 0.66 -0.1 696,500 - BWI76_RS03375 0.66 +1.2 696,501 - BWI76_RS03375 0.66 -1.1 696,511 - BWI76_RS03375 0.70 +1.2 696,514 + BWI76_RS03375 0.71 -1.1 696,514 + BWI76_RS03375 0.71 +0.2 696,514 + BWI76_RS03375 0.71 -0.8 696,522 - BWI76_RS03375 0.73 +0.1 696,522 - BWI76_RS03375 0.73 -0.6 696,522 - BWI76_RS03375 0.73 -1.6 696,522 - BWI76_RS03375 0.73 +0.2 696,522 - BWI76_RS03375 0.73 +0.4 696,522 - BWI76_RS03375 0.73 -0.6 696,522 - BWI76_RS03375 0.73 -1.5 696,527 - BWI76_RS03375 0.75 +0.9 696,545 - BWI76_RS03375 0.82 +0.0 696,573 + -0.4 696,581 - -0.9 696,600 - -0.1 696,615 + -0.4 696,678 - -1.8 696,682 + -0.3 696,690 - +1.4 696,720 + -0.2 696,720 + +0.6 696,720 + +0.2 696,741 + -1.4 696,741 + -0.9 696,769 + -0.1 696,771 + -0.4 696,811 + +0.9 696,832 - +0.2 696,887 + BWI76_RS03380 0.12 -0.8 696,887 + BWI76_RS03380 0.12 -2.1 696,900 + BWI76_RS03380 0.14 -1.6 696,900 + BWI76_RS03380 0.14 -2.0 696,900 + BWI76_RS03380 0.14 +0.2 696,900 + BWI76_RS03380 0.14 +1.2 696,900 + BWI76_RS03380 0.14 +0.2 696,908 - BWI76_RS03380 0.14 +1.2 696,908 - BWI76_RS03380 0.14 -0.8 696,908 - BWI76_RS03380 0.14 +1.1 696,908 - BWI76_RS03380 0.14 -1.1 696,921 - BWI76_RS03380 0.16 +1.8 696,929 + BWI76_RS03380 0.17 -1.4 696,931 + BWI76_RS03380 0.17 +1.2 696,938 + BWI76_RS03380 0.18 -0.8 696,938 - BWI76_RS03380 0.18 -2.7 696,939 - BWI76_RS03380 0.18 -0.4 697,012 + BWI76_RS03380 0.26 +1.2 697,020 - BWI76_RS03380 0.27 +0.2 697,039 - BWI76_RS03380 0.29 +1.2 697,052 - BWI76_RS03380 0.30 +1.2 697,088 - BWI76_RS03380 0.34 +0.2 697,095 - BWI76_RS03380 0.35 +1.0 697,254 + BWI76_RS03380 0.52 -0.8 697,531 + BWI76_RS03380 0.82 -1.1 697,531 + BWI76_RS03380 0.82 -0.6 697,539 - BWI76_RS03380 0.83 -0.8 697,539 - BWI76_RS03380 0.83 -1.6 697,541 + BWI76_RS03380 0.83 -1.0 697,541 + BWI76_RS03380 0.83 -0.4 697,541 + BWI76_RS03380 0.83 +1.2 697,541 + BWI76_RS03380 0.83 +0.2 697,541 + BWI76_RS03380 0.83 -0.4 697,541 + BWI76_RS03380 0.83 -1.9 697,541 + BWI76_RS03380 0.83 +1.2 697,541 + BWI76_RS03380 0.83 +1.2 697,541 + BWI76_RS03380 0.83 +0.4 697,541 + BWI76_RS03380 0.83 +1.6 697,541 + BWI76_RS03380 0.83 +0.6 697,541 + BWI76_RS03380 0.83 -0.1 697,542 + BWI76_RS03380 0.84 -1.4 697,549 + BWI76_RS03380 0.84 +0.5 697,549 - BWI76_RS03380 0.84 -0.1
Or see this region's nucleotide sequence