Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02940 and BWI76_RS02945 are separated by 260 nucleotides BWI76_RS02945 and BWI76_RS02950 are separated by 79 nucleotides BWI76_RS02950 and BWI76_RS02955 are separated by 26 nucleotides
BWI76_RS02940: BWI76_RS02940 - RpiR family transcriptional regulator, at 601,371 to 602,114
_RS02940
BWI76_RS02945: BWI76_RS02945 - PTS sugar transporter subunit IIB, at 602,375 to 602,683
_RS02945
BWI76_RS02950: BWI76_RS02950 - 6-phospho-beta-glucosidase, at 602,763 to 604,070
_RS02950
BWI76_RS02955: BWI76_RS02955 - PTS system, cellobiose-specific IIC component, at 604,097 to 605,453
_RS02955
Position (kb) 602
603
604
605 Strain fitness (log2 ratio) -1
0
1 at 601.887 kb on - strand, within BWI76_RS02940 at 602.079 kb on + strand at 602.344 kb on - strand at 602.382 kb on + strand at 602.390 kb on - strand at 602.575 kb on + strand at 602.669 kb on + strand at 602.731 kb on + strand at 602.811 kb on - strand at 602.811 kb on - strand at 602.827 kb on + strand at 602.827 kb on + strand at 602.835 kb on - strand at 602.927 kb on + strand, within BWI76_RS02950 at 603.340 kb on + strand, within BWI76_RS02950 at 603.402 kb on + strand, within BWI76_RS02950 at 603.673 kb on + strand, within BWI76_RS02950 at 603.730 kb on - strand, within BWI76_RS02950 at 604.028 kb on + strand at 604.029 kb on + strand at 604.031 kb on - strand at 604.100 kb on - strand at 604.171 kb on + strand at 604.395 kb on + strand, within BWI76_RS02955 at 604.395 kb on + strand, within BWI76_RS02955 at 604.697 kb on - strand, within BWI76_RS02955 at 604.762 kb on + strand, within BWI76_RS02955 at 604.842 kb on + strand, within BWI76_RS02955 at 604.842 kb on + strand, within BWI76_RS02955 at 604.850 kb on - strand, within BWI76_RS02955 at 604.886 kb on - strand, within BWI76_RS02955 at 604.922 kb on - strand, within BWI76_RS02955 at 604.975 kb on + strand, within BWI76_RS02955 at 605.048 kb on - strand, within BWI76_RS02955
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 601,887 - BWI76_RS02940 0.69 +0.4 602,079 + +0.2 602,344 - +1.2 602,382 + +0.0 602,390 - -0.3 602,575 + +0.3 602,669 + -0.4 602,731 + -0.9 602,811 - +0.6 602,811 - +0.1 602,827 + +0.3 602,827 + -0.0 602,835 - +0.7 602,927 + BWI76_RS02950 0.13 +0.6 603,340 + BWI76_RS02950 0.44 +0.5 603,402 + BWI76_RS02950 0.49 +0.2 603,673 + BWI76_RS02950 0.70 +1.1 603,730 - BWI76_RS02950 0.74 +0.6 604,028 + -1.3 604,029 + -0.1 604,031 - -0.3 604,100 - -1.3 604,171 + -1.6 604,395 + BWI76_RS02955 0.22 +0.1 604,395 + BWI76_RS02955 0.22 +0.5 604,697 - BWI76_RS02955 0.44 -0.1 604,762 + BWI76_RS02955 0.49 +0.7 604,842 + BWI76_RS02955 0.55 +0.7 604,842 + BWI76_RS02955 0.55 -0.3 604,850 - BWI76_RS02955 0.55 +0.4 604,886 - BWI76_RS02955 0.58 +0.4 604,922 - BWI76_RS02955 0.61 +0.7 604,975 + BWI76_RS02955 0.65 +0.6 605,048 - BWI76_RS02955 0.70 -0.3
Or see this region's nucleotide sequence