Strain Fitness in Sinorhizobium meliloti 1021 around SMc03948

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03895 and SMc03896 are separated by 390 nucleotidesSMc03896 and SMc03948 are separated by 14 nucleotidesSMc03948 and SMc03898 overlap by 4 nucleotidesSMc03898 and SMc03899 are separated by 24 nucleotidesSMc03899 and SMc03900 are separated by 286 nucleotides SMc03895: SMc03895 - pyruvate carboxylase, at 3,562,521 to 3,565,979 SMc03895 SMc03896: SMc03896 - transcriptional regulator, at 3,566,370 to 3,566,924 SMc03896 SMc03948: SMc03948 - transposase ISRM1, at 3,566,939 to 3,567,769 SMc03948 SMc03898: SMc03898 - transposase ISRM1, at 3,567,766 to 3,568,158 SMc03898 SMc03899: SMc03899 - hypothetical protein, at 3,568,183 to 3,568,434 SMc03899 SMc03900: SMc03900 - cyclic beta-1,2-glucan ABc transporter, at 3,568,721 to 3,570,571 SMc03900 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -3 -2 -1 0 1at 3565.994 kb on - strandat 3565.994 kb on - strandat 3566.035 kb on - strandat 3566.035 kb on - strandat 3566.037 kb on + strandat 3566.209 kb on - strandat 3566.265 kb on + strandat 3566.266 kb on - strandat 3566.456 kb on - strand, within SMc03896at 3566.456 kb on - strand, within SMc03896at 3566.456 kb on - strand, within SMc03896at 3566.741 kb on + strand, within SMc03896at 3566.741 kb on + strand, within SMc03896at 3566.742 kb on - strand, within SMc03896at 3566.742 kb on - strand, within SMc03896at 3566.742 kb on - strand, within SMc03896at 3566.743 kb on + strand, within SMc03896at 3566.744 kb on - strand, within SMc03896at 3566.744 kb on - strand, within SMc03896at 3566.896 kb on + strandat 3566.897 kb on - strandat 3568.323 kb on - strand, within SMc03899at 3568.426 kb on - strandat 3568.587 kb on - strandat 3568.592 kb on - strandat 3568.592 kb on - strandat 3568.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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3,565,994 - -0.4
3,565,994 - +0.5
3,566,035 - -0.1
3,566,035 - -0.8
3,566,037 + -2.8
3,566,209 - -0.4
3,566,265 + +0.8
3,566,266 - -0.4
3,566,456 - SMc03896 0.15 +0.1
3,566,456 - SMc03896 0.15 -0.5
3,566,456 - SMc03896 0.15 -0.1
3,566,741 + SMc03896 0.67 -2.4
3,566,741 + SMc03896 0.67 +0.5
3,566,742 - SMc03896 0.67 +0.1
3,566,742 - SMc03896 0.67 -0.1
3,566,742 - SMc03896 0.67 +0.1
3,566,743 + SMc03896 0.67 -0.0
3,566,744 - SMc03896 0.67 +0.6
3,566,744 - SMc03896 0.67 +0.5
3,566,896 + -0.0
3,566,897 - -0.1
3,568,323 - SMc03899 0.56 +0.5
3,568,426 - -0.0
3,568,587 - +0.4
3,568,592 - +0.3
3,568,592 - +0.2
3,568,625 - -0.3

Or see this region's nucleotide sequence