Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03895 and SMc03896 are separated by 390 nucleotides SMc03896 and SMc03948 are separated by 14 nucleotides SMc03948 and SMc03898 overlap by 4 nucleotides SMc03898 and SMc03899 are separated by 24 nucleotides SMc03899 and SMc03900 are separated by 286 nucleotides
SMc03895: SMc03895 - pyruvate carboxylase, at 3,562,521 to 3,565,979
SMc03895
SMc03896: SMc03896 - transcriptional regulator, at 3,566,370 to 3,566,924
SMc03896
SMc03948: SMc03948 - transposase ISRM1, at 3,566,939 to 3,567,769
SMc03948
SMc03898: SMc03898 - transposase ISRM1, at 3,567,766 to 3,568,158
SMc03898
SMc03899: SMc03899 - hypothetical protein, at 3,568,183 to 3,568,434
SMc03899
SMc03900: SMc03900 - cyclic beta-1,2-glucan ABc transporter, at 3,568,721 to 3,570,571
SMc03900
Position (kb)
3566
3567
3568 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3565.994 kb on - strand at 3565.994 kb on - strand at 3566.035 kb on - strand at 3566.035 kb on - strand at 3566.037 kb on + strand at 3566.209 kb on - strand at 3566.265 kb on + strand at 3566.266 kb on - strand at 3566.456 kb on - strand, within SMc03896 at 3566.456 kb on - strand, within SMc03896 at 3566.456 kb on - strand, within SMc03896 at 3566.741 kb on + strand, within SMc03896 at 3566.741 kb on + strand, within SMc03896 at 3566.742 kb on - strand, within SMc03896 at 3566.742 kb on - strand, within SMc03896 at 3566.742 kb on - strand, within SMc03896 at 3566.743 kb on + strand, within SMc03896 at 3566.744 kb on - strand, within SMc03896 at 3566.744 kb on - strand, within SMc03896 at 3566.896 kb on + strand at 3566.897 kb on - strand at 3568.323 kb on - strand, within SMc03899 at 3568.426 kb on - strand at 3568.587 kb on - strand at 3568.592 kb on - strand at 3568.592 kb on - strand at 3568.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 3,565,994 - -0.4 3,565,994 - +0.5 3,566,035 - -0.1 3,566,035 - -0.8 3,566,037 + -2.8 3,566,209 - -0.4 3,566,265 + +0.8 3,566,266 - -0.4 3,566,456 - SMc03896 0.15 +0.1 3,566,456 - SMc03896 0.15 -0.5 3,566,456 - SMc03896 0.15 -0.1 3,566,741 + SMc03896 0.67 -2.4 3,566,741 + SMc03896 0.67 +0.5 3,566,742 - SMc03896 0.67 +0.1 3,566,742 - SMc03896 0.67 -0.1 3,566,742 - SMc03896 0.67 +0.1 3,566,743 + SMc03896 0.67 -0.0 3,566,744 - SMc03896 0.67 +0.6 3,566,744 - SMc03896 0.67 +0.5 3,566,896 + -0.0 3,566,897 - -0.1 3,568,323 - SMc03899 0.56 +0.5 3,568,426 - -0.0 3,568,587 - +0.4 3,568,592 - +0.3 3,568,592 - +0.2 3,568,625 - -0.3
Or see this region's nucleotide sequence