Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03277 and SMc03278 are separated by 146 nucleotides SMc03278 and SMc03279 overlap by 4 nucleotides SMc03279 and SMc03280 are separated by 48 nucleotides
SMc03277: SMc03277 - transport transmembrane protein, at 3,391,946 to 3,393,589
SMc03277
SMc03278: SMc03278 - transposase number 1 for insertion sequence ISRM28, at 3,393,736 to 3,394,194
SMc03278
SMc03279: SMc03279 - transposase number 2 for insertion sequence ISRM28, at 3,394,191 to 3,394,547
SMc03279
SMc03280: SMc03280 - transposase number 3 for insertion sequence ISRM28, at 3,394,596 to 3,395,336
SMc03280
Position (kb)
3393
3394
3395 Strain fitness (log2 ratio)
-1
0
1 at 3392.741 kb on + strand, within SMc03277 at 3392.742 kb on - strand, within SMc03277 at 3393.018 kb on - strand, within SMc03277 at 3393.068 kb on - strand, within SMc03277 at 3393.147 kb on + strand, within SMc03277 at 3393.147 kb on + strand, within SMc03277 at 3393.147 kb on + strand, within SMc03277 at 3393.147 kb on + strand, within SMc03277 at 3393.148 kb on - strand, within SMc03277 at 3393.148 kb on - strand, within SMc03277 at 3393.148 kb on - strand, within SMc03277 at 3393.148 kb on - strand, within SMc03277 at 3393.270 kb on + strand, within SMc03277 at 3393.305 kb on - strand, within SMc03277 at 3393.433 kb on - strand at 3393.533 kb on - strand at 3393.533 kb on - strand at 3393.705 kb on + strand at 3393.705 kb on + strand at 3394.308 kb on + strand, within SMc03279 at 3394.391 kb on - strand, within SMc03279 at 3394.618 kb on + strand at 3394.619 kb on - strand at 3394.899 kb on + strand, within SMc03280 at 3394.899 kb on + strand, within SMc03280 at 3395.037 kb on + strand, within SMc03280 at 3395.038 kb on - strand, within SMc03280 at 3395.038 kb on - strand, within SMc03280 at 3395.115 kb on - strand, within SMc03280
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 3,392,741 + SMc03277 0.48 -0.1 3,392,742 - SMc03277 0.48 +1.1 3,393,018 - SMc03277 0.65 +1.1 3,393,068 - SMc03277 0.68 +0.1 3,393,147 + SMc03277 0.73 +0.1 3,393,147 + SMc03277 0.73 +0.4 3,393,147 + SMc03277 0.73 +0.1 3,393,147 + SMc03277 0.73 +0.6 3,393,148 - SMc03277 0.73 +0.5 3,393,148 - SMc03277 0.73 +1.0 3,393,148 - SMc03277 0.73 -0.3 3,393,148 - SMc03277 0.73 -1.0 3,393,270 + SMc03277 0.81 +0.2 3,393,305 - SMc03277 0.83 -0.1 3,393,433 - +0.4 3,393,533 - -1.3 3,393,533 - +0.5 3,393,705 + +0.3 3,393,705 + +0.4 3,394,308 + SMc03279 0.33 +1.2 3,394,391 - SMc03279 0.56 +0.1 3,394,618 + +0.1 3,394,619 - -0.2 3,394,899 + SMc03280 0.41 -1.4 3,394,899 + SMc03280 0.41 +0.2 3,395,037 + SMc03280 0.60 -0.4 3,395,038 - SMc03280 0.60 -0.6 3,395,038 - SMc03280 0.60 -0.2 3,395,115 - SMc03280 0.70 -0.1
Or see this region's nucleotide sequence