Strain Fitness in Sinorhizobium meliloti 1021 around SMc03278

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03277 and SMc03278 are separated by 146 nucleotidesSMc03278 and SMc03279 overlap by 4 nucleotidesSMc03279 and SMc03280 are separated by 48 nucleotides SMc03277: SMc03277 - transport transmembrane protein, at 3,391,946 to 3,393,589 SMc03277 SMc03278: SMc03278 - transposase number 1 for insertion sequence ISRM28, at 3,393,736 to 3,394,194 SMc03278 SMc03279: SMc03279 - transposase number 2 for insertion sequence ISRM28, at 3,394,191 to 3,394,547 SMc03279 SMc03280: SMc03280 - transposase number 3 for insertion sequence ISRM28, at 3,394,596 to 3,395,336 SMc03280 Position (kb) 3393 3394 3395Strain fitness (log2 ratio) -1 0 1at 3392.741 kb on + strand, within SMc03277at 3392.742 kb on - strand, within SMc03277at 3393.018 kb on - strand, within SMc03277at 3393.068 kb on - strand, within SMc03277at 3393.147 kb on + strand, within SMc03277at 3393.147 kb on + strand, within SMc03277at 3393.147 kb on + strand, within SMc03277at 3393.147 kb on + strand, within SMc03277at 3393.148 kb on - strand, within SMc03277at 3393.148 kb on - strand, within SMc03277at 3393.148 kb on - strand, within SMc03277at 3393.148 kb on - strand, within SMc03277at 3393.270 kb on + strand, within SMc03277at 3393.305 kb on - strand, within SMc03277at 3393.433 kb on - strandat 3393.533 kb on - strandat 3393.533 kb on - strandat 3393.705 kb on + strandat 3393.705 kb on + strandat 3394.308 kb on + strand, within SMc03279at 3394.391 kb on - strand, within SMc03279at 3394.618 kb on + strandat 3394.619 kb on - strandat 3394.899 kb on + strand, within SMc03280at 3394.899 kb on + strand, within SMc03280at 3395.037 kb on + strand, within SMc03280at 3395.038 kb on - strand, within SMc03280at 3395.038 kb on - strand, within SMc03280at 3395.115 kb on - strand, within SMc03280

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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3,392,741 + SMc03277 0.48 -0.1
3,392,742 - SMc03277 0.48 +1.1
3,393,018 - SMc03277 0.65 +1.1
3,393,068 - SMc03277 0.68 +0.1
3,393,147 + SMc03277 0.73 +0.1
3,393,147 + SMc03277 0.73 +0.4
3,393,147 + SMc03277 0.73 +0.1
3,393,147 + SMc03277 0.73 +0.6
3,393,148 - SMc03277 0.73 +0.5
3,393,148 - SMc03277 0.73 +1.0
3,393,148 - SMc03277 0.73 -0.3
3,393,148 - SMc03277 0.73 -1.0
3,393,270 + SMc03277 0.81 +0.2
3,393,305 - SMc03277 0.83 -0.1
3,393,433 - +0.4
3,393,533 - -1.3
3,393,533 - +0.5
3,393,705 + +0.3
3,393,705 + +0.4
3,394,308 + SMc03279 0.33 +1.2
3,394,391 - SMc03279 0.56 +0.1
3,394,618 + +0.1
3,394,619 - -0.2
3,394,899 + SMc03280 0.41 -1.4
3,394,899 + SMc03280 0.41 +0.2
3,395,037 + SMc03280 0.60 -0.4
3,395,038 - SMc03280 0.60 -0.6
3,395,038 - SMc03280 0.60 -0.2
3,395,115 - SMc03280 0.70 -0.1

Or see this region's nucleotide sequence