Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02310 and SMc02311 are separated by 97 nucleotides SMc02311 and SMc02312 are separated by 4 nucleotides SMc02312 and SMc02207 are separated by 239 nucleotides SMc02207 and SMc04431 are separated by 268 nucleotides SMc04431 and SMc04432 overlap by 4 nucleotides
SMc02310: SMc02310 - translation initiation factor IF-1, at 682,321 to 682,539
SMc02310
SMc02311: SMc02311 - Maf-like protein, at 682,637 to 683,257
SMc02311
SMc02312: SMc02312 - zinc-binding protein, at 683,262 to 683,474
SMc02312
SMc02207: SMc02207 - tRNA-Phe, at 683,714 to 683,789
SMc02207
SMc04431: SMc04431 - hypothetical protein, at 684,058 to 684,321
SMc04431
SMc04432: SMc04432 - hypothetical protein, at 684,318 to 684,635
SMc04432
Position (kb) 683
684 Strain fitness (log2 ratio) -2
-1
0
1 at 682.537 kb on + strand at 682.537 kb on + strand at 682.622 kb on + strand at 683.358 kb on + strand, within SMc02312 at 683.359 kb on - strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.419 kb on - strand, within SMc02312 at 683.500 kb on + strand at 683.500 kb on + strand at 683.500 kb on + strand at 683.791 kb on + strand at 683.792 kb on - strand at 683.870 kb on - strand at 683.998 kb on + strand at 683.998 kb on + strand at 683.998 kb on + strand at 683.999 kb on - strand at 684.009 kb on + strand at 684.010 kb on - strand at 684.015 kb on - strand at 684.053 kb on - strand at 684.128 kb on + strand, within SMc04431 at 684.128 kb on + strand, within SMc04431 at 684.128 kb on + strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.265 kb on - strand, within SMc04431 at 684.265 kb on - strand, within SMc04431 at 684.266 kb on + strand, within SMc04431 at 684.324 kb on - strand at 684.368 kb on + strand, within SMc04432 at 684.369 kb on - strand, within SMc04432 at 684.422 kb on + strand, within SMc04432 at 684.423 kb on - strand, within SMc04432 at 684.473 kb on + strand, within SMc04432 at 684.473 kb on + strand, within SMc04432 at 684.474 kb on - strand, within SMc04432
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 682,537 + -0.8 682,537 + +0.5 682,622 + -0.9 683,358 + SMc02312 0.45 +0.9 683,359 - SMc02312 0.46 -0.1 683,418 + SMc02312 0.73 +0.3 683,418 + SMc02312 0.73 +0.3 683,418 + SMc02312 0.73 -1.0 683,419 - SMc02312 0.74 +1.4 683,500 + -0.5 683,500 + -0.3 683,500 + -0.1 683,791 + +1.3 683,792 - -0.1 683,870 - -0.0 683,998 + -0.2 683,998 + -0.0 683,998 + +0.3 683,999 - +0.5 684,009 + -0.2 684,010 - +0.1 684,015 - -0.9 684,053 - -1.1 684,128 + SMc04431 0.27 +0.6 684,128 + SMc04431 0.27 -0.3 684,128 + SMc04431 0.27 -0.9 684,129 - SMc04431 0.27 -0.2 684,129 - SMc04431 0.27 +0.5 684,129 - SMc04431 0.27 -0.4 684,129 - SMc04431 0.27 -0.3 684,129 - SMc04431 0.27 +0.2 684,129 - SMc04431 0.27 -0.2 684,178 - SMc04431 0.45 +0.2 684,178 - SMc04431 0.45 -0.6 684,178 - SMc04431 0.45 -0.8 684,265 - SMc04431 0.78 -0.1 684,265 - SMc04431 0.78 -0.2 684,266 + SMc04431 0.79 -0.1 684,324 - -1.0 684,368 + SMc04432 0.16 -0.7 684,369 - SMc04432 0.16 -1.6 684,422 + SMc04432 0.33 -1.8 684,423 - SMc04432 0.33 -1.2 684,473 + SMc04432 0.49 +0.1 684,473 + SMc04432 0.49 -0.6 684,474 - SMc04432 0.49 -0.3
Or see this region's nucleotide sequence