Strain Fitness in Sinorhizobium meliloti 1021 around SMc00983

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00984 and SMc00983 are separated by 65 nucleotidesSMc00983 and SMc00982 are separated by 637 nucleotides SMc00984: SMc00984 - hypothetical protein, at 952,806 to 953,780 SMc00984 SMc00983: SMc00983 - hypothetical protein, at 953,846 to 954,439 SMc00983 SMc00982: SMc00982 - dioxygenase, at 955,077 to 956,321 SMc00982 Position (kb) 953 954 955Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 954.018 kb on + strand, within SMc00983at 954.018 kb on + strand, within SMc00983at 954.019 kb on - strand, within SMc00983at 954.019 kb on - strand, within SMc00983at 954.019 kb on - strand, within SMc00983at 954.096 kb on + strand, within SMc00983at 954.159 kb on + strand, within SMc00983at 954.159 kb on + strand, within SMc00983at 954.304 kb on - strand, within SMc00983at 954.421 kb on - strandat 954.424 kb on - strandat 954.490 kb on + strandat 954.522 kb on - strandat 954.642 kb on - strandat 954.642 kb on - strandat 954.665 kb on + strandat 954.665 kb on + strandat 954.731 kb on - strandat 954.761 kb on + strandat 955.128 kb on + strandat 955.129 kb on - strandat 955.164 kb on + strandat 955.165 kb on - strandat 955.165 kb on - strandat 955.194 kb on + strandat 955.248 kb on + strand, within SMc00982at 955.411 kb on - strand, within SMc00982at 955.411 kb on - strand, within SMc00982

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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954,018 + SMc00983 0.29 -0.5
954,018 + SMc00983 0.29 -1.2
954,019 - SMc00983 0.29 +0.3
954,019 - SMc00983 0.29 +0.6
954,019 - SMc00983 0.29 -0.2
954,096 + SMc00983 0.42 -0.2
954,159 + SMc00983 0.53 +0.2
954,159 + SMc00983 0.53 -0.2
954,304 - SMc00983 0.77 -0.9
954,421 - +0.3
954,424 - -0.0
954,490 + +0.1
954,522 - +0.2
954,642 - +0.1
954,642 - +1.1
954,665 + +0.1
954,665 + +1.0
954,731 - -0.8
954,761 + -0.2
955,128 + -1.8
955,129 - -2.4
955,164 + -2.7
955,165 - -2.2
955,165 - -0.0
955,194 + -3.5
955,248 + SMc00982 0.14 -2.9
955,411 - SMc00982 0.27 -4.0
955,411 - SMc00982 0.27 -2.7

Or see this region's nucleotide sequence