Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00918 and SMc00917 overlap by 4 nucleotides SMc00917 and SMc00916 are separated by 119 nucleotides SMc00916 and SMc00915 overlap by 226 nucleotides SMc00915 and SMc00914 are separated by 87 nucleotides
SMc00918: SMc00918 - ATP phosphoribosyltransferase regulatory subunit, at 864,669 to 865,808
SMc00918
SMc00917: SMc00917 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 865,805 to 866,500
SMc00917
SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363
SMc00916
SMc00915: SMc00915 - hypothetical protein, at 867,138 to 867,329
SMc00915
SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634
SMc00914
Position (kb) 865
866
867 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 864.888 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 865.369 kb on + strand, within SMc00918 at 865.370 kb on - strand, within SMc00918 at 865.629 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.633 kb on - strand, within SMc00918 at 865.633 kb on - strand, within SMc00918 at 865.736 kb on + strand at 865.737 kb on - strand at 865.955 kb on + strand, within SMc00917 at 865.955 kb on + strand, within SMc00917 at 866.129 kb on + strand, within SMc00917 at 866.130 kb on - strand, within SMc00917 at 866.217 kb on - strand, within SMc00917 at 866.217 kb on - strand, within SMc00917 at 866.452 kb on + strand at 866.452 kb on + strand at 866.569 kb on + strand at 866.569 kb on + strand at 866.606 kb on + strand at 866.689 kb on + strand at 866.689 kb on + strand at 866.753 kb on - strand, within SMc00916 at 866.753 kb on - strand, within SMc00916 at 866.905 kb on + strand, within SMc00916 at 866.905 kb on + strand, within SMc00916 at 866.906 kb on - strand, within SMc00916 at 866.906 kb on - strand, within SMc00916 at 866.957 kb on - strand, within SMc00916 at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.160 kb on - strand at 867.160 kb on - strand at 867.183 kb on + strand at 867.213 kb on + strand at 867.214 kb on - strand at 867.214 kb on - strand at 867.237 kb on + strand at 867.238 kb on - strand at 867.238 kb on - strand at 867.238 kb on - strand at 867.239 kb on + strand at 867.240 kb on - strand at 867.240 kb on - strand at 867.240 kb on - strand at 867.327 kb on + strand at 867.328 kb on - strand at 867.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 864,888 - SMc00918 0.19 -4.8 864,919 - SMc00918 0.22 -3.7 864,919 - SMc00918 0.22 -3.0 864,924 + SMc00918 0.22 -3.1 864,924 + SMc00918 0.22 -6.0 864,925 - SMc00918 0.22 -5.6 864,925 - SMc00918 0.22 -3.0 864,972 + SMc00918 0.27 -1.7 864,972 + SMc00918 0.27 -5.1 865,369 + SMc00918 0.61 -2.0 865,370 - SMc00918 0.61 -4.6 865,629 + SMc00918 0.84 -6.3 865,632 + SMc00918 0.84 -1.1 865,632 + SMc00918 0.84 -5.9 865,632 + SMc00918 0.84 -3.4 865,633 - SMc00918 0.85 -2.3 865,633 - SMc00918 0.85 -4.7 865,736 + -3.4 865,737 - -5.4 865,955 + SMc00917 0.22 -3.6 865,955 + SMc00917 0.22 -1.8 866,129 + SMc00917 0.47 -4.2 866,130 - SMc00917 0.47 -4.9 866,217 - SMc00917 0.59 -5.0 866,217 - SMc00917 0.59 -3.5 866,452 + -4.0 866,452 + -4.7 866,569 + +0.2 866,569 + -0.1 866,606 + +0.4 866,689 + +0.4 866,689 + +0.3 866,753 - SMc00916 0.18 -0.9 866,753 - SMc00916 0.18 +0.4 866,905 + SMc00916 0.38 -0.6 866,905 + SMc00916 0.38 -0.0 866,906 - SMc00916 0.38 +0.2 866,906 - SMc00916 0.38 +0.0 866,957 - SMc00916 0.45 -0.2 867,159 + -0.2 867,159 + -0.2 867,159 + +0.1 867,159 + +0.3 867,159 + +0.7 867,159 + -0.7 867,159 + -0.7 867,160 - -0.3 867,160 - +0.9 867,183 + -0.6 867,213 + -0.1 867,214 - +0.1 867,214 - -0.1 867,237 + +0.5 867,238 - +0.0 867,238 - +0.2 867,238 - +0.4 867,239 + +0.3 867,240 - +0.0 867,240 - +0.3 867,240 - -0.4 867,327 + +0.2 867,328 - -0.2 867,328 - -0.1
Or see this region's nucleotide sequence