Strain Fitness in Sinorhizobium meliloti 1021 around SMa0958

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0956 and SMa0958 overlap by 4 nucleotidesSMa0958 and SMa0959 overlap by 4 nucleotidesSMa0959 and SMa0961 are separated by 20 nucleotides SMa0956: SMa0956 - AtrB glutamate-1-semialdehyde 2,1-aminomutase, at 534,818 to 536,179 SMa0956 SMa0958: SMa0958 - acetolactate synthase catalytic subunit, at 536,176 to 537,888 SMa0958 SMa0959: SMa0959 - 3-ketoacyl-ACP reductase, at 537,885 to 538,661 SMa0959 SMa0961: SMa0961 - Response regulator, at 538,682 to 539,404 SMa0961 Position (kb) 536 537 538Strain fitness (log2 ratio) -1 0 1 2at 535.254 kb on + strand, within SMa0956at 535.255 kb on - strand, within SMa0956at 535.274 kb on + strand, within SMa0956at 535.324 kb on + strand, within SMa0956at 535.342 kb on + strand, within SMa0956at 535.343 kb on - strand, within SMa0956at 535.365 kb on - strand, within SMa0956at 535.365 kb on - strand, within SMa0956at 535.365 kb on - strand, within SMa0956at 535.365 kb on - strand, within SMa0956at 535.555 kb on + strand, within SMa0956at 535.556 kb on - strand, within SMa0956at 535.556 kb on - strand, within SMa0956at 535.556 kb on - strand, within SMa0956at 535.556 kb on - strand, within SMa0956at 535.559 kb on + strand, within SMa0956at 535.607 kb on + strand, within SMa0956at 535.668 kb on + strand, within SMa0956at 535.695 kb on + strand, within SMa0956at 535.713 kb on + strand, within SMa0956at 535.714 kb on - strand, within SMa0956at 536.056 kb on - strandat 536.056 kb on - strandat 536.060 kb on + strandat 536.114 kb on - strandat 536.214 kb on + strandat 536.216 kb on + strandat 536.357 kb on + strand, within SMa0958at 536.599 kb on + strand, within SMa0958at 536.599 kb on + strand, within SMa0958at 536.599 kb on + strand, within SMa0958at 536.600 kb on - strand, within SMa0958at 536.720 kb on + strand, within SMa0958at 536.927 kb on - strand, within SMa0958at 536.927 kb on - strand, within SMa0958at 536.927 kb on - strand, within SMa0958at 536.992 kb on + strand, within SMa0958at 536.992 kb on + strand, within SMa0958at 536.993 kb on - strand, within SMa0958at 536.993 kb on - strand, within SMa0958at 537.133 kb on + strand, within SMa0958at 537.134 kb on - strand, within SMa0958at 537.134 kb on - strand, within SMa0958at 537.134 kb on - strand, within SMa0958at 537.183 kb on - strand, within SMa0958at 537.183 kb on - strand, within SMa0958at 537.259 kb on + strand, within SMa0958at 537.259 kb on + strand, within SMa0958at 537.260 kb on - strand, within SMa0958at 537.260 kb on - strand, within SMa0958at 537.356 kb on + strand, within SMa0958at 537.368 kb on + strand, within SMa0958at 537.447 kb on + strand, within SMa0958at 537.609 kb on + strand, within SMa0958at 537.610 kb on - strand, within SMa0958at 537.610 kb on - strand, within SMa0958at 537.679 kb on + strand, within SMa0958at 537.679 kb on + strand, within SMa0958at 537.813 kb on - strandat 538.102 kb on + strand, within SMa0959at 538.102 kb on + strand, within SMa0959at 538.103 kb on - strand, within SMa0959at 538.103 kb on - strand, within SMa0959at 538.103 kb on - strand, within SMa0959at 538.171 kb on + strand, within SMa0959at 538.171 kb on + strand, within SMa0959at 538.334 kb on + strand, within SMa0959at 538.374 kb on + strand, within SMa0959at 538.374 kb on + strand, within SMa0959at 538.374 kb on + strand, within SMa0959at 538.375 kb on - strand, within SMa0959at 538.375 kb on - strand, within SMa0959at 538.375 kb on - strand, within SMa0959at 538.508 kb on - strand, within SMa0959at 538.508 kb on - strand, within SMa0959at 538.589 kb on + strandat 538.701 kb on + strandat 538.701 kb on + strandat 538.701 kb on + strandat 538.702 kb on - strandat 538.702 kb on - strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.704 kb on - strandat 538.705 kb on + strandat 538.706 kb on - strandat 538.801 kb on + strand, within SMa0961at 538.866 kb on - strand, within SMa0961

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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535,254 + SMa0956 0.32 -0.2
535,255 - SMa0956 0.32 +0.4
535,274 + SMa0956 0.33 +0.6
535,324 + SMa0956 0.37 +0.3
535,342 + SMa0956 0.38 +0.1
535,343 - SMa0956 0.39 -0.4
535,365 - SMa0956 0.40 +0.2
535,365 - SMa0956 0.40 +0.2
535,365 - SMa0956 0.40 +0.5
535,365 - SMa0956 0.40 +0.7
535,555 + SMa0956 0.54 -0.0
535,556 - SMa0956 0.54 -0.2
535,556 - SMa0956 0.54 -0.9
535,556 - SMa0956 0.54 -0.0
535,556 - SMa0956 0.54 -0.3
535,559 + SMa0956 0.54 -0.1
535,607 + SMa0956 0.58 +0.8
535,668 + SMa0956 0.62 +0.7
535,695 + SMa0956 0.64 -0.3
535,713 + SMa0956 0.66 -1.1
535,714 - SMa0956 0.66 -1.2
536,056 - -0.5
536,056 - -0.4
536,060 + +0.2
536,114 - -0.2
536,214 + -0.3
536,216 + +0.1
536,357 + SMa0958 0.11 -0.3
536,599 + SMa0958 0.25 -0.4
536,599 + SMa0958 0.25 -0.1
536,599 + SMa0958 0.25 -0.5
536,600 - SMa0958 0.25 -0.2
536,720 + SMa0958 0.32 -0.4
536,927 - SMa0958 0.44 -0.2
536,927 - SMa0958 0.44 +0.0
536,927 - SMa0958 0.44 -0.5
536,992 + SMa0958 0.48 -1.0
536,992 + SMa0958 0.48 -0.5
536,993 - SMa0958 0.48 -0.3
536,993 - SMa0958 0.48 -0.2
537,133 + SMa0958 0.56 +0.0
537,134 - SMa0958 0.56 -0.3
537,134 - SMa0958 0.56 +2.3
537,134 - SMa0958 0.56 -0.7
537,183 - SMa0958 0.59 +0.6
537,183 - SMa0958 0.59 -0.7
537,259 + SMa0958 0.63 -0.1
537,259 + SMa0958 0.63 -0.0
537,260 - SMa0958 0.63 -0.6
537,260 - SMa0958 0.63 -0.7
537,356 + SMa0958 0.69 -0.9
537,368 + SMa0958 0.70 +0.8
537,447 + SMa0958 0.74 +0.5
537,609 + SMa0958 0.84 +0.0
537,610 - SMa0958 0.84 -0.5
537,610 - SMa0958 0.84 -1.0
537,679 + SMa0958 0.88 +0.3
537,679 + SMa0958 0.88 +0.5
537,813 - +0.5
538,102 + SMa0959 0.28 -0.6
538,102 + SMa0959 0.28 +0.1
538,103 - SMa0959 0.28 -0.3
538,103 - SMa0959 0.28 +1.0
538,103 - SMa0959 0.28 +0.0
538,171 + SMa0959 0.37 +0.0
538,171 + SMa0959 0.37 +0.7
538,334 + SMa0959 0.58 -0.5
538,374 + SMa0959 0.63 -0.2
538,374 + SMa0959 0.63 -0.6
538,374 + SMa0959 0.63 -0.3
538,375 - SMa0959 0.63 -1.1
538,375 - SMa0959 0.63 +0.5
538,375 - SMa0959 0.63 +0.7
538,508 - SMa0959 0.80 +0.2
538,508 - SMa0959 0.80 -0.6
538,589 + -0.6
538,701 + +0.5
538,701 + -0.1
538,701 + +0.3
538,702 - +0.3
538,702 - +0.6
538,703 + +0.1
538,703 + -0.2
538,703 + -0.2
538,703 + -0.5
538,703 + +0.8
538,704 - -0.0
538,705 + +0.6
538,706 - +0.1
538,801 + SMa0961 0.16 -0.1
538,866 - SMa0961 0.25 +1.3

Or see this region's nucleotide sequence