Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21655

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21653 and SM_b21654 overlap by 4 nucleotidesSM_b21654 and SM_b21655 are separated by 5 nucleotidesSM_b21655 and SM_b20002 overlap by 4 nucleotides SM_b21653: SM_b21653 - ABC transporter for Lactose, permease component 1 (from data), at 1,369 to 2,265 _b21653 SM_b21654: SM_b21654 - ABC transporter for Lactose, permease component 2 (from data), at 2,262 to 3,080 _b21654 SM_b21655: SM_b21655 - Beta-galactosidase (EC 3.2.1.23) (from data), at 3,086 to 5,353 _b21655 SM_b20002: SM_b20002 - ABC transporter for Lactose, ATPase component (from data), at 5,350 to 6,426 _b20002 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2.134 kb on + strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.140 kb on + strand, within SM_b21653at 2.141 kb on - strand, within SM_b21653at 2.195 kb on - strandat 2.195 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.721 kb on + strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.800 kb on + strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.815 kb on - strand, within SM_b21654at 2.838 kb on + strand, within SM_b21654at 2.839 kb on - strand, within SM_b21654at 2.883 kb on + strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.961 kb on + strand, within SM_b21654at 2.962 kb on - strand, within SM_b21654at 2.964 kb on + strand, within SM_b21654at 3.033 kb on + strandat 3.079 kb on - strandat 3.079 kb on - strandat 3.101 kb on - strandat 3.218 kb on + strandat 3.236 kb on + strandat 3.236 kb on + strandat 3.254 kb on + strandat 3.370 kb on + strand, within SM_b21655at 3.380 kb on + strand, within SM_b21655at 3.497 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.507 kb on - strand, within SM_b21655at 3.518 kb on + strand, within SM_b21655at 3.518 kb on + strand, within SM_b21655at 3.519 kb on - strand, within SM_b21655at 3.565 kb on + strand, within SM_b21655at 3.645 kb on + strand, within SM_b21655at 3.797 kb on + strand, within SM_b21655at 3.797 kb on + strand, within SM_b21655at 3.798 kb on - strand, within SM_b21655at 3.951 kb on - strand, within SM_b21655at 4.043 kb on + strand, within SM_b21655at 4.253 kb on + strand, within SM_b21655at 4.254 kb on - strand, within SM_b21655at 4.460 kb on + strand, within SM_b21655at 4.490 kb on + strand, within SM_b21655at 4.491 kb on - strand, within SM_b21655at 4.505 kb on + strand, within SM_b21655at 4.568 kb on + strand, within SM_b21655at 4.616 kb on + strand, within SM_b21655at 4.617 kb on - strand, within SM_b21655at 4.658 kb on + strand, within SM_b21655at 4.658 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.704 kb on - strandat 4.704 kb on - strand, within SM_b21655at 4.704 kb on - strand, within SM_b21655at 4.704 kb on - strand, within SM_b21655at 4.710 kb on - strand, within SM_b21655at 4.842 kb on - strand, within SM_b21655at 5.041 kb on + strand, within SM_b21655at 5.041 kb on + strand, within SM_b21655at 5.042 kb on - strand, within SM_b21655at 5.380 kb on - strandat 5.380 kb on - strandat 5.426 kb on + strandat 5.426 kb on + strandat 5.427 kb on - strandat 5.599 kb on + strand, within SM_b20002at 5.599 kb on + strand, within SM_b20002at 5.599 kb on + strand, within SM_b20002at 5.608 kb on + strand, within SM_b20002at 5.608 kb on + strand, within SM_b20002at 5.616 kb on + strand, within SM_b20002at 5.617 kb on - strand, within SM_b20002at 5.617 kb on - strand, within SM_b20002at 5.635 kb on - strand, within SM_b20002at 5.635 kb on - strand, within SM_b20002at 5.706 kb on + strand, within SM_b20002at 5.863 kb on - strand, within SM_b20002at 5.914 kb on + strand, within SM_b20002at 5.915 kb on - strand, within SM_b20002at 6.013 kb on + strand, within SM_b20002at 6.014 kb on - strand, within SM_b20002at 6.281 kb on - strand, within SM_b20002

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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2,134 + SM_b21653 0.85 -2.8
2,135 - SM_b21653 0.85 -1.1
2,135 - SM_b21653 0.85 -1.0
2,140 + SM_b21653 0.86 -3.0
2,141 - SM_b21653 0.86 -5.0
2,195 - -5.5
2,195 - -1.9
2,302 - -5.8
2,302 - -1.7
2,302 - -3.9
2,721 + SM_b21654 0.56 -3.3
2,722 - SM_b21654 0.56 -1.5
2,722 - SM_b21654 0.56 -3.6
2,800 + SM_b21654 0.66 -4.1
2,801 - SM_b21654 0.66 -4.9
2,801 - SM_b21654 0.66 -0.4
2,814 + SM_b21654 0.67 +0.2
2,814 + SM_b21654 0.67 -4.3
2,815 - SM_b21654 0.68 -2.7
2,838 + SM_b21654 0.70 -3.4
2,839 - SM_b21654 0.70 -2.7
2,883 + SM_b21654 0.76 -1.1
2,884 - SM_b21654 0.76 -2.2
2,884 - SM_b21654 0.76 -2.4
2,884 - SM_b21654 0.76 -4.5
2,961 + SM_b21654 0.85 -3.1
2,962 - SM_b21654 0.85 -1.9
2,964 + SM_b21654 0.86 -4.5
3,033 + -3.5
3,079 - -2.6
3,079 - -3.2
3,101 - -0.8
3,218 + -1.0
3,236 + -2.4
3,236 + -5.2
3,254 + -2.9
3,370 + SM_b21655 0.13 -2.0
3,380 + SM_b21655 0.13 -2.2
3,497 + SM_b21655 0.18 -3.7
3,506 + SM_b21655 0.19 -3.3
3,506 + SM_b21655 0.19 -4.3
3,506 + SM_b21655 0.19 -4.3
3,507 - SM_b21655 0.19 -2.3
3,518 + SM_b21655 0.19 -4.6
3,518 + SM_b21655 0.19 -3.9
3,519 - SM_b21655 0.19 -2.0
3,565 + SM_b21655 0.21 -2.7
3,645 + SM_b21655 0.25 -4.6
3,797 + SM_b21655 0.31 -3.9
3,797 + SM_b21655 0.31 -5.1
3,798 - SM_b21655 0.31 -4.8
3,951 - SM_b21655 0.38 -3.9
4,043 + SM_b21655 0.42 -4.5
4,253 + SM_b21655 0.51 -5.1
4,254 - SM_b21655 0.51 -4.5
4,460 + SM_b21655 0.61 -3.2
4,490 + SM_b21655 0.62 -3.8
4,491 - SM_b21655 0.62 -3.5
4,505 + SM_b21655 0.63 -1.8
4,568 + SM_b21655 0.65 -4.2
4,616 + SM_b21655 0.67 -4.9
4,617 - SM_b21655 0.68 -2.5
4,658 + SM_b21655 0.69 -1.0
4,658 + SM_b21655 0.69 -4.3
4,703 + SM_b21655 0.71 -3.7
4,703 + SM_b21655 0.71 -4.9
4,703 + SM_b21655 0.71 -3.3
4,703 + SM_b21655 0.71 -2.5
4,703 + SM_b21655 0.71 -5.8
4,703 + SM_b21655 0.71 -2.9
4,704 - +0.8
4,704 - SM_b21655 0.71 -5.2
4,704 - SM_b21655 0.71 -5.9
4,704 - SM_b21655 0.71 -3.7
4,710 - SM_b21655 0.72 -3.6
4,842 - SM_b21655 0.77 -4.7
5,041 + SM_b21655 0.86 -4.6
5,041 + SM_b21655 0.86 -5.0
5,042 - SM_b21655 0.86 -3.7
5,380 - -4.3
5,380 - -4.6
5,426 + -3.1
5,426 + -5.6
5,427 - -1.0
5,599 + SM_b20002 0.23 -3.3
5,599 + SM_b20002 0.23 -4.7
5,599 + SM_b20002 0.23 -3.9
5,608 + SM_b20002 0.24 -3.4
5,608 + SM_b20002 0.24 -4.1
5,616 + SM_b20002 0.25 -1.9
5,617 - SM_b20002 0.25 -2.4
5,617 - SM_b20002 0.25 -4.9
5,635 - SM_b20002 0.26 -1.0
5,635 - SM_b20002 0.26 -4.0
5,706 + SM_b20002 0.33 -4.4
5,863 - SM_b20002 0.48 -3.3
5,914 + SM_b20002 0.52 -5.4
5,915 - SM_b20002 0.52 -4.2
6,013 + SM_b20002 0.62 +0.8
6,014 - SM_b20002 0.62 -4.1
6,281 - SM_b20002 0.86 -4.0

Or see this region's nucleotide sequence