Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21203 and SM_b21666 are separated by 60 nucleotides SM_b21666 and SM_b21204 are separated by 87 nucleotides SM_b21204 and SM_b21205 are separated by 1 nucleotides
SM_b21203: SM_b21203 - esteraselipase/thioesterase, at 954,986 to 955,588
_b21203
SM_b21666: SM_b21666 - hypothetical protein, at 955,649 to 955,867
_b21666
SM_b21204: SM_b21204 - ABC transporter permease, at 955,955 to 957,067
_b21204
SM_b21205: SM_b21205 - ABC transporter permease, at 957,069 to 958,223
_b21205
Position (kb) 955
956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 955.001 kb on + strand at 955.001 kb on + strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.117 kb on + strand, within SM_b21203 at 955.117 kb on + strand, within SM_b21203 at 955.143 kb on + strand, within SM_b21203 at 955.193 kb on + strand, within SM_b21203 at 955.193 kb on + strand, within SM_b21203 at 955.194 kb on - strand, within SM_b21203 at 955.292 kb on + strand, within SM_b21203 at 955.293 kb on - strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.488 kb on - strand, within SM_b21203 at 955.488 kb on - strand, within SM_b21203 at 955.611 kb on - strand at 955.611 kb on - strand at 955.635 kb on + strand at 955.636 kb on - strand at 955.776 kb on + strand, within SM_b21666 at 955.870 kb on + strand at 955.871 kb on - strand at 956.054 kb on + strand at 956.055 kb on - strand at 956.055 kb on - strand at 956.094 kb on + strand, within SM_b21204 at 956.095 kb on - strand, within SM_b21204 at 956.274 kb on + strand, within SM_b21204 at 956.350 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.771 kb on + strand, within SM_b21204 at 956.835 kb on - strand, within SM_b21204 at 956.949 kb on + strand, within SM_b21204 at 957.202 kb on - strand, within SM_b21205 at 957.208 kb on + strand, within SM_b21205 at 957.209 kb on - strand, within SM_b21205 at 957.226 kb on + strand, within SM_b21205 at 957.226 kb on + strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.409 kb on + strand, within SM_b21205 at 957.410 kb on - strand, within SM_b21205 at 957.502 kb on + strand, within SM_b21205 at 957.778 kb on + strand, within SM_b21205 at 957.779 kb on - strand, within SM_b21205
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 955,001 + -0.4 955,001 + +0.2 955,002 - +0.1 955,002 - +0.5 955,002 - -0.2 955,002 - +0.4 955,117 + SM_b21203 0.22 +0.7 955,117 + SM_b21203 0.22 -0.4 955,143 + SM_b21203 0.26 -0.4 955,193 + SM_b21203 0.34 -1.6 955,193 + SM_b21203 0.34 -0.5 955,194 - SM_b21203 0.34 -0.1 955,292 + SM_b21203 0.51 -0.5 955,293 - SM_b21203 0.51 -0.6 955,487 + SM_b21203 0.83 -0.3 955,487 + SM_b21203 0.83 -0.5 955,487 + SM_b21203 0.83 +1.5 955,488 - SM_b21203 0.83 +0.1 955,488 - SM_b21203 0.83 -0.4 955,611 - +1.1 955,611 - -0.5 955,635 + -0.8 955,636 - -0.1 955,776 + SM_b21666 0.58 -0.2 955,870 + +0.2 955,871 - -0.0 956,054 + -0.2 956,055 - -0.0 956,055 - -0.2 956,094 + SM_b21204 0.12 +0.1 956,095 - SM_b21204 0.13 +0.6 956,274 + SM_b21204 0.29 +0.6 956,350 + SM_b21204 0.35 +1.4 956,352 + SM_b21204 0.36 +0.8 956,352 + SM_b21204 0.36 -0.3 956,352 + SM_b21204 0.36 -0.2 956,352 + SM_b21204 0.36 -0.8 956,352 + SM_b21204 0.36 -0.0 956,352 + SM_b21204 0.36 +0.4 956,353 - SM_b21204 0.36 +1.2 956,353 - SM_b21204 0.36 -0.5 956,353 - SM_b21204 0.36 -3.0 956,551 - SM_b21204 0.54 -0.1 956,551 - SM_b21204 0.54 -0.7 956,771 + SM_b21204 0.73 +0.5 956,835 - SM_b21204 0.79 +0.4 956,949 + SM_b21204 0.89 +0.7 957,202 - SM_b21205 0.12 +0.8 957,208 + SM_b21205 0.12 -0.2 957,209 - SM_b21205 0.12 +0.2 957,226 + SM_b21205 0.14 +0.2 957,226 + SM_b21205 0.14 +1.1 957,227 - SM_b21205 0.14 -0.6 957,227 - SM_b21205 0.14 -0.3 957,227 - SM_b21205 0.14 -0.4 957,227 - SM_b21205 0.14 +0.9 957,409 + SM_b21205 0.29 +0.8 957,410 - SM_b21205 0.30 -0.8 957,502 + SM_b21205 0.37 -0.3 957,778 + SM_b21205 0.61 +0.6 957,779 - SM_b21205 0.61 +0.0
Or see this region's nucleotide sequence