Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21199 and SM_b21200 are separated by 202 nucleotides SM_b21200 and SM_b21201 overlap by 4 nucleotides
SM_b21199: SM_b21199 - oligopeptide ABC transporter ATP-binding protein, at 948,716 to 950,317
_b21199
SM_b21200: SM_b21200 - two-component response regulator protein, at 950,520 to 951,863
_b21200
SM_b21201: SM_b21201 - two-component sensor histidine kinase, at 951,860 to 953,680
_b21201
Position (kb) 950
951
952 Strain fitness (log2 ratio) -1
0
1 at 949.571 kb on + strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.639 kb on + strand, within SM_b21199 at 949.743 kb on - strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.154 kb on - strand, within SM_b21199 at 950.201 kb on + strand at 950.201 kb on + strand at 950.279 kb on + strand at 950.281 kb on + strand at 950.465 kb on - strand at 950.575 kb on + strand at 950.851 kb on + strand, within SM_b21200 at 950.954 kb on - strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 951.040 kb on - strand, within SM_b21200 at 951.359 kb on + strand, within SM_b21200 at 951.360 kb on - strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.729 kb on - strand at 951.729 kb on - strand at 951.770 kb on + strand at 951.770 kb on + strand at 951.771 kb on - strand at 951.771 kb on - strand at 951.978 kb on + strand at 952.001 kb on + strand at 952.001 kb on + strand at 952.002 kb on - strand at 952.029 kb on + strand at 952.246 kb on - strand, within SM_b21201 at 952.480 kb on - strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.751 kb on - strand, within SM_b21201 at 952.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 949,571 + SM_b21199 0.53 -0.0 949,571 + SM_b21199 0.53 +1.1 949,573 + SM_b21199 0.53 -0.5 949,573 + SM_b21199 0.53 -0.7 949,574 - SM_b21199 0.54 -1.0 949,574 - SM_b21199 0.54 +1.1 949,639 + SM_b21199 0.58 +0.1 949,743 - SM_b21199 0.64 +0.5 950,153 + SM_b21199 0.90 +0.3 950,153 + SM_b21199 0.90 +0.3 950,153 + SM_b21199 0.90 -0.5 950,154 - SM_b21199 0.90 +0.2 950,201 + +0.5 950,201 + +0.1 950,279 + +0.9 950,281 + +0.3 950,465 - -0.2 950,575 + -1.2 950,851 + SM_b21200 0.25 +0.9 950,954 - SM_b21200 0.32 +0.5 950,985 + SM_b21200 0.35 +0.6 950,985 + SM_b21200 0.35 +0.5 950,985 + SM_b21200 0.35 +0.1 951,040 - SM_b21200 0.39 -0.2 951,359 + SM_b21200 0.62 +0.2 951,360 - SM_b21200 0.62 +1.7 951,568 + SM_b21200 0.78 +0.1 951,568 + SM_b21200 0.78 +1.3 951,729 - -0.3 951,729 - +0.7 951,770 + +0.3 951,770 + -0.5 951,771 - +1.1 951,771 - +0.5 951,978 + -0.6 952,001 + -0.4 952,001 + +0.4 952,002 - +0.0 952,029 + +0.0 952,246 - SM_b21201 0.21 -0.1 952,480 - SM_b21201 0.34 -0.4 952,750 + SM_b21201 0.49 +0.1 952,750 + SM_b21201 0.49 +0.3 952,751 - SM_b21201 0.49 +0.5 952,751 - +0.7
Or see this region's nucleotide sequence