Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20941 and SM_b20942 are separated by 532 nucleotides SM_b20942 and SM_b20943 are separated by 85 nucleotides
SM_b20941: SM_b20941 - MsbA-like saccharide exporting ABC transporter ATP-binding/permease subunits, at 1,165,803 to 1,167,617
_b20941
SM_b20942: SM_b20942 - UDP glucose 4-epimerase, at 1,168,150 to 1,169,136
_b20942
SM_b20943: SM_b20943 - acetyltransferase, at 1,169,222 to 1,170,175
_b20943
Position (kb)
1168
1169
1170 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1167.476 kb on + strand at 1167.477 kb on - strand at 1167.511 kb on - strand at 1167.608 kb on + strand at 1167.617 kb on + strand at 1167.617 kb on + strand at 1167.617 kb on + strand at 1167.618 kb on - strand at 1167.719 kb on - strand at 1167.811 kb on - strand at 1167.835 kb on + strand at 1167.836 kb on - strand at 1167.871 kb on - strand at 1167.902 kb on + strand at 1167.969 kb on + strand at 1168.190 kb on - strand at 1168.423 kb on + strand, within SM_b20942 at 1168.554 kb on + strand, within SM_b20942 at 1168.628 kb on - strand, within SM_b20942 at 1168.628 kb on - strand, within SM_b20942 at 1168.646 kb on + strand, within SM_b20942 at 1168.658 kb on - strand, within SM_b20942 at 1168.790 kb on - strand, within SM_b20942 at 1168.822 kb on + strand, within SM_b20942 at 1168.822 kb on + strand, within SM_b20942 at 1168.825 kb on - strand, within SM_b20942 at 1168.825 kb on - strand, within SM_b20942 at 1168.825 kb on - strand, within SM_b20942 at 1168.870 kb on + strand, within SM_b20942 at 1169.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 1,167,476 + -1.3 1,167,477 - +0.3 1,167,511 - -0.5 1,167,608 + -0.4 1,167,617 + +0.0 1,167,617 + -0.4 1,167,617 + -0.0 1,167,618 - +0.2 1,167,719 - +0.1 1,167,811 - -0.4 1,167,835 + -0.0 1,167,836 - +0.7 1,167,871 - -0.7 1,167,902 + -0.3 1,167,969 + +0.3 1,168,190 - -0.5 1,168,423 + SM_b20942 0.28 -1.0 1,168,554 + SM_b20942 0.41 +0.0 1,168,628 - SM_b20942 0.48 -0.8 1,168,628 - SM_b20942 0.48 +0.1 1,168,646 + SM_b20942 0.50 -1.2 1,168,658 - SM_b20942 0.51 +1.4 1,168,790 - SM_b20942 0.65 +0.8 1,168,822 + SM_b20942 0.68 +0.0 1,168,822 + SM_b20942 0.68 -0.6 1,168,825 - SM_b20942 0.68 -0.3 1,168,825 - SM_b20942 0.68 +0.6 1,168,825 - SM_b20942 0.68 -3.1 1,168,870 + SM_b20942 0.73 +0.8 1,169,055 - +1.4
Or see this region's nucleotide sequence