Experiment: Glucose (C) and Betaine (N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20865 and PFLU_RS20870 are separated by 94 nucleotides PFLU_RS20870 and PFLU_RS20875 overlap by 17 nucleotides PFLU_RS20875 and PFLU_RS20880 are separated by 148 nucleotides
PFLU_RS20865: PFLU_RS20865 - DUF1963 domain-containing protein, at 4,689,643 to 4,690,338
_RS20865
PFLU_RS20870: PFLU_RS20870 - hypothetical protein, at 4,690,433 to 4,690,813
_RS20870
PFLU_RS20875: PFLU_RS20875 - hypothetical protein, at 4,690,797 to 4,691,516
_RS20875
PFLU_RS20880: PFLU_RS20880 - hypothetical protein, at 4,691,665 to 4,692,912
_RS20880
Position (kb) 4690
4691
4692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4689.823 kb on + strand, within PFLU_RS20865 at 4689.823 kb on + strand, within PFLU_RS20865 at 4689.823 kb on + strand, within PFLU_RS20865 at 4689.824 kb on - strand, within PFLU_RS20865 at 4689.824 kb on - strand, within PFLU_RS20865 at 4689.824 kb on - strand, within PFLU_RS20865 at 4689.972 kb on + strand, within PFLU_RS20865 at 4689.973 kb on - strand, within PFLU_RS20865 at 4689.973 kb on - strand, within PFLU_RS20865 at 4690.091 kb on + strand, within PFLU_RS20865 at 4690.091 kb on + strand, within PFLU_RS20865 at 4690.091 kb on + strand, within PFLU_RS20865 at 4690.092 kb on - strand, within PFLU_RS20865 at 4690.092 kb on - strand, within PFLU_RS20865 at 4690.092 kb on - strand, within PFLU_RS20865 at 4690.118 kb on + strand, within PFLU_RS20865 at 4690.119 kb on - strand, within PFLU_RS20865 at 4690.119 kb on - strand, within PFLU_RS20865 at 4690.126 kb on + strand, within PFLU_RS20865 at 4690.126 kb on + strand, within PFLU_RS20865 at 4690.127 kb on - strand, within PFLU_RS20865 at 4690.127 kb on - strand, within PFLU_RS20865 at 4690.127 kb on - strand, within PFLU_RS20865 at 4690.129 kb on + strand, within PFLU_RS20865 at 4690.130 kb on - strand, within PFLU_RS20865 at 4690.130 kb on - strand, within PFLU_RS20865 at 4690.130 kb on - strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.321 kb on + strand at 4690.321 kb on + strand at 4690.322 kb on - strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.547 kb on - strand, within PFLU_RS20870 at 4690.547 kb on - strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.557 kb on - strand, within PFLU_RS20870 at 4690.839 kb on + strand at 4690.840 kb on - strand at 4690.879 kb on + strand, within PFLU_RS20875 at 4690.895 kb on + strand, within PFLU_RS20875 at 4690.896 kb on - strand, within PFLU_RS20875 at 4690.896 kb on - strand, within PFLU_RS20875 at 4690.913 kb on - strand, within PFLU_RS20875 at 4690.913 kb on - strand, within PFLU_RS20875 at 4690.996 kb on + strand, within PFLU_RS20875 at 4690.996 kb on + strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.999 kb on + strand, within PFLU_RS20875 at 4690.999 kb on + strand, within PFLU_RS20875 at 4690.999 kb on + strand, within PFLU_RS20875 at 4691.000 kb on - strand, within PFLU_RS20875 at 4691.099 kb on + strand, within PFLU_RS20875 at 4691.276 kb on - strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.518 kb on + strand at 4691.518 kb on + strand at 4691.518 kb on + strand at 4691.519 kb on - strand at 4691.519 kb on - strand at 4691.519 kb on - strand at 4691.519 kb on - strand at 4691.575 kb on + strand at 4691.575 kb on + strand at 4691.576 kb on - strand at 4691.576 kb on - strand at 4691.576 kb on - strand at 4691.593 kb on + strand at 4691.594 kb on - strand at 4691.600 kb on + strand at 4691.665 kb on - strand at 4691.803 kb on - strand, within PFLU_RS20880 at 4691.948 kb on - strand, within PFLU_RS20880 at 4691.986 kb on + strand, within PFLU_RS20880 at 4691.986 kb on + strand, within PFLU_RS20880 at 4691.986 kb on + strand, within PFLU_RS20880 at 4691.987 kb on - strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4692.091 kb on + strand, within PFLU_RS20880 at 4692.092 kb on - strand, within PFLU_RS20880 at 4692.205 kb on - strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.493 kb on + strand, within PFLU_RS20880 at 4692.493 kb on + strand, within PFLU_RS20880 at 4692.494 kb on - strand, within PFLU_RS20880 at 4692.494 kb on - strand, within PFLU_RS20880
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Betaine (N); with MOPS; with chloride remove 4,689,823 + PFLU_RS20865 0.26 -2.1 4,689,823 + PFLU_RS20865 0.26 -0.6 4,689,823 + PFLU_RS20865 0.26 +0.4 4,689,824 - PFLU_RS20865 0.26 +1.7 4,689,824 - PFLU_RS20865 0.26 +1.7 4,689,824 - PFLU_RS20865 0.26 -0.9 4,689,972 + PFLU_RS20865 0.47 -0.6 4,689,973 - PFLU_RS20865 0.47 -3.0 4,689,973 - PFLU_RS20865 0.47 +0.3 4,690,091 + PFLU_RS20865 0.64 +0.7 4,690,091 + PFLU_RS20865 0.64 -0.1 4,690,091 + PFLU_RS20865 0.64 +0.6 4,690,092 - PFLU_RS20865 0.65 -0.1 4,690,092 - PFLU_RS20865 0.65 -0.2 4,690,092 - PFLU_RS20865 0.65 +0.7 4,690,118 + PFLU_RS20865 0.68 +1.6 4,690,119 - PFLU_RS20865 0.68 -0.1 4,690,119 - PFLU_RS20865 0.68 -2.2 4,690,126 + PFLU_RS20865 0.69 +0.1 4,690,126 + PFLU_RS20865 0.69 +1.2 4,690,127 - PFLU_RS20865 0.70 +0.8 4,690,127 - PFLU_RS20865 0.70 -0.3 4,690,127 - PFLU_RS20865 0.70 -0.3 4,690,129 + PFLU_RS20865 0.70 +0.5 4,690,130 - PFLU_RS20865 0.70 +1.7 4,690,130 - PFLU_RS20865 0.70 +0.1 4,690,130 - PFLU_RS20865 0.70 +1.9 4,690,150 + PFLU_RS20865 0.73 +0.5 4,690,150 + PFLU_RS20865 0.73 -1.0 4,690,150 + PFLU_RS20865 0.73 -0.1 4,690,150 + PFLU_RS20865 0.73 +0.3 4,690,150 + PFLU_RS20865 0.73 -1.3 4,690,150 + PFLU_RS20865 0.73 -0.9 4,690,150 + PFLU_RS20865 0.73 +0.7 4,690,150 + PFLU_RS20865 0.73 -0.6 4,690,150 + PFLU_RS20865 0.73 -0.6 4,690,150 + PFLU_RS20865 0.73 +0.6 4,690,150 + PFLU_RS20865 0.73 +0.7 4,690,150 + PFLU_RS20865 0.73 -0.4 4,690,150 + PFLU_RS20865 0.73 -0.3 4,690,150 + PFLU_RS20865 0.73 +2.2 4,690,151 - PFLU_RS20865 0.73 -1.5 4,690,151 - PFLU_RS20865 0.73 -1.6 4,690,151 - PFLU_RS20865 0.73 +1.0 4,690,151 - PFLU_RS20865 0.73 -0.3 4,690,151 - PFLU_RS20865 0.73 +0.8 4,690,151 - PFLU_RS20865 0.73 -0.2 4,690,151 - PFLU_RS20865 0.73 -1.5 4,690,151 - PFLU_RS20865 0.73 +0.1 4,690,151 - PFLU_RS20865 0.73 -0.5 4,690,151 - PFLU_RS20865 0.73 -0.3 4,690,158 + PFLU_RS20865 0.74 -0.5 4,690,158 + PFLU_RS20865 0.74 -0.5 4,690,158 + PFLU_RS20865 0.74 -1.8 4,690,158 + PFLU_RS20865 0.74 +0.3 4,690,158 + PFLU_RS20865 0.74 -0.6 4,690,159 - PFLU_RS20865 0.74 +3.2 4,690,159 - PFLU_RS20865 0.74 +1.1 4,690,159 - PFLU_RS20865 0.74 +1.2 4,690,159 - PFLU_RS20865 0.74 +0.8 4,690,159 - PFLU_RS20865 0.74 +0.7 4,690,159 - PFLU_RS20865 0.74 +0.8 4,690,159 - PFLU_RS20865 0.74 +1.1 4,690,159 - PFLU_RS20865 0.74 -2.1 4,690,159 - PFLU_RS20865 0.74 -0.7 4,690,321 + +0.8 4,690,321 + +1.7 4,690,322 - +0.6 4,690,430 + -1.6 4,690,430 + -1.3 4,690,430 + +0.8 4,690,430 + +1.7 4,690,430 + +0.3 4,690,430 + +0.7 4,690,430 + +0.5 4,690,430 + +1.1 4,690,430 + +0.1 4,690,430 + +1.7 4,690,430 + -0.7 4,690,430 + -0.9 4,690,430 + -0.9 4,690,430 + +0.7 4,690,430 + -0.2 4,690,430 + +2.2 4,690,430 + -1.7 4,690,431 - -1.5 4,690,431 - -1.4 4,690,431 - -1.9 4,690,431 - +0.5 4,690,431 - -1.6 4,690,431 - +1.1 4,690,431 - +1.5 4,690,431 - +0.1 4,690,431 - -0.3 4,690,431 - -0.4 4,690,431 - -1.2 4,690,431 - +0.5 4,690,431 - -0.4 4,690,431 - +2.7 4,690,431 - +0.5 4,690,431 - -2.1 4,690,547 - PFLU_RS20870 0.30 +1.7 4,690,547 - PFLU_RS20870 0.30 +2.2 4,690,556 + PFLU_RS20870 0.32 -1.7 4,690,556 + PFLU_RS20870 0.32 +0.7 4,690,556 + PFLU_RS20870 0.32 -1.6 4,690,556 + PFLU_RS20870 0.32 -0.3 4,690,557 - PFLU_RS20870 0.33 +1.5 4,690,839 + -0.5 4,690,840 - +0.7 4,690,879 + PFLU_RS20875 0.11 +0.4 4,690,895 + PFLU_RS20875 0.14 -1.3 4,690,896 - PFLU_RS20875 0.14 +1.4 4,690,896 - PFLU_RS20875 0.14 -3.1 4,690,913 - PFLU_RS20875 0.16 +0.8 4,690,913 - PFLU_RS20875 0.16 +0.5 4,690,996 + PFLU_RS20875 0.28 -1.9 4,690,996 + PFLU_RS20875 0.28 +0.3 4,690,997 - PFLU_RS20875 0.28 +0.5 4,690,997 - PFLU_RS20875 0.28 -2.4 4,690,997 - PFLU_RS20875 0.28 +0.7 4,690,997 - PFLU_RS20875 0.28 -1.9 4,690,997 - PFLU_RS20875 0.28 -1.4 4,690,999 + PFLU_RS20875 0.28 -0.7 4,690,999 + PFLU_RS20875 0.28 -0.9 4,690,999 + PFLU_RS20875 0.28 +0.5 4,691,000 - PFLU_RS20875 0.28 -0.6 4,691,099 + PFLU_RS20875 0.42 -0.5 4,691,276 - PFLU_RS20875 0.67 -2.1 4,691,283 + PFLU_RS20875 0.68 -1.6 4,691,283 + PFLU_RS20875 0.68 -1.3 4,691,284 - PFLU_RS20875 0.68 -0.7 4,691,284 - PFLU_RS20875 0.68 -0.1 4,691,284 - PFLU_RS20875 0.68 +1.1 4,691,284 - PFLU_RS20875 0.68 +1.5 4,691,518 + +1.3 4,691,518 + -1.9 4,691,518 + +0.3 4,691,519 - +1.7 4,691,519 - +0.1 4,691,519 - -0.5 4,691,519 - -1.9 4,691,575 + -2.6 4,691,575 + +1.3 4,691,576 - +1.3 4,691,576 - +0.1 4,691,576 - -0.0 4,691,593 + +0.3 4,691,594 - +0.1 4,691,600 + -3.1 4,691,665 - -1.4 4,691,803 - PFLU_RS20880 0.11 -0.3 4,691,948 - PFLU_RS20880 0.23 +0.1 4,691,986 + PFLU_RS20880 0.26 -0.6 4,691,986 + PFLU_RS20880 0.26 +0.0 4,691,986 + PFLU_RS20880 0.26 +0.0 4,691,987 - PFLU_RS20880 0.26 +0.9 4,691,989 + PFLU_RS20880 0.26 -0.0 4,691,989 + PFLU_RS20880 0.26 -1.8 4,691,989 + PFLU_RS20880 0.26 +0.7 4,691,989 + PFLU_RS20880 0.26 -1.2 4,691,989 + PFLU_RS20880 0.26 -0.7 4,691,989 + PFLU_RS20880 0.26 +0.7 4,691,989 + PFLU_RS20880 0.26 -0.3 4,691,989 + PFLU_RS20880 0.26 +0.4 4,691,989 + PFLU_RS20880 0.26 -0.2 4,691,989 + PFLU_RS20880 0.26 +0.3 4,691,989 + PFLU_RS20880 0.26 -0.3 4,691,990 - PFLU_RS20880 0.26 -0.1 4,691,990 - PFLU_RS20880 0.26 -1.5 4,691,990 - PFLU_RS20880 0.26 +0.5 4,691,990 - PFLU_RS20880 0.26 +1.2 4,691,990 - PFLU_RS20880 0.26 +0.5 4,691,990 - PFLU_RS20880 0.26 -0.6 4,691,990 - PFLU_RS20880 0.26 +1.0 4,692,091 + PFLU_RS20880 0.34 -0.2 4,692,092 - PFLU_RS20880 0.34 +0.4 4,692,205 - PFLU_RS20880 0.43 +0.9 4,692,400 + PFLU_RS20880 0.59 -0.3 4,692,400 + PFLU_RS20880 0.59 -1.9 4,692,401 - PFLU_RS20880 0.59 +1.1 4,692,401 - PFLU_RS20880 0.59 +0.9 4,692,401 - PFLU_RS20880 0.59 +0.9 4,692,401 - PFLU_RS20880 0.59 +0.5 4,692,401 - PFLU_RS20880 0.59 -0.6 4,692,406 + PFLU_RS20880 0.59 -0.5 4,692,406 + PFLU_RS20880 0.59 -2.3 4,692,406 + PFLU_RS20880 0.59 +0.4 4,692,406 + PFLU_RS20880 0.59 -1.5 4,692,406 + PFLU_RS20880 0.59 -0.8 4,692,406 + PFLU_RS20880 0.59 +1.9 4,692,406 + PFLU_RS20880 0.59 -0.3 4,692,406 + PFLU_RS20880 0.59 -2.5 4,692,406 + PFLU_RS20880 0.59 +1.8 4,692,406 + PFLU_RS20880 0.59 +0.7 4,692,406 + PFLU_RS20880 0.59 -2.4 4,692,406 + PFLU_RS20880 0.59 +0.2 4,692,406 + PFLU_RS20880 0.59 -1.4 4,692,406 + PFLU_RS20880 0.59 -0.9 4,692,406 + PFLU_RS20880 0.59 +0.8 4,692,406 + PFLU_RS20880 0.59 +1.2 4,692,407 - PFLU_RS20880 0.59 +0.1 4,692,407 - PFLU_RS20880 0.59 +0.0 4,692,407 - PFLU_RS20880 0.59 -0.0 4,692,407 - PFLU_RS20880 0.59 -0.4 4,692,407 - PFLU_RS20880 0.59 -0.6 4,692,407 - PFLU_RS20880 0.59 +0.5 4,692,407 - PFLU_RS20880 0.59 -0.7 4,692,407 - PFLU_RS20880 0.59 -0.8 4,692,407 - PFLU_RS20880 0.59 -1.6 4,692,407 - PFLU_RS20880 0.59 +0.4 4,692,407 - PFLU_RS20880 0.59 +0.5 4,692,493 + PFLU_RS20880 0.66 -0.6 4,692,493 + PFLU_RS20880 0.66 -1.5 4,692,494 - PFLU_RS20880 0.66 -0.9 4,692,494 - PFLU_RS20880 0.66 -0.2
Or see this region's nucleotide sequence