Experiment: RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02355 and BWI76_RS02360 are separated by 134 nucleotides BWI76_RS02360 and BWI76_RS02365 are separated by 86 nucleotides BWI76_RS02365 and BWI76_RS02370 are separated by 23 nucleotides
BWI76_RS02355: BWI76_RS02355 - molecular chaperone GroEL, at 483,512 to 485,158
_RS02355
BWI76_RS02360: BWI76_RS02360 - hypothetical protein, at 485,293 to 485,646
_RS02360
BWI76_RS02365: BWI76_RS02365 - hypothetical protein, at 485,733 to 486,596
_RS02365
BWI76_RS02370: BWI76_RS02370 - colicin V synthesis protein, at 486,620 to 488,743
_RS02370
Position (kb) 485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 485.083 kb on + strand at 485.174 kb on - strand at 485.259 kb on - strand at 485.329 kb on + strand, within BWI76_RS02360 at 485.329 kb on + strand, within BWI76_RS02360 at 485.342 kb on - strand, within BWI76_RS02360 at 485.342 kb on - strand, within BWI76_RS02360 at 485.414 kb on - strand, within BWI76_RS02360 at 485.435 kb on - strand, within BWI76_RS02360 at 485.472 kb on + strand, within BWI76_RS02360 at 485.480 kb on - strand, within BWI76_RS02360 at 485.517 kb on + strand, within BWI76_RS02360 at 485.550 kb on + strand, within BWI76_RS02360 at 485.591 kb on + strand, within BWI76_RS02360 at 485.591 kb on + strand, within BWI76_RS02360 at 485.599 kb on - strand, within BWI76_RS02360 at 485.599 kb on - strand, within BWI76_RS02360 at 485.625 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.626 kb on + strand at 485.634 kb on - strand at 485.634 kb on - strand at 485.634 kb on - strand at 485.634 kb on - strand at 485.645 kb on + strand at 485.656 kb on + strand at 485.656 kb on + strand at 485.657 kb on + strand at 485.662 kb on + strand at 485.662 kb on + strand at 485.664 kb on - strand at 485.665 kb on - strand at 485.669 kb on + strand at 485.670 kb on - strand at 485.672 kb on + strand at 485.680 kb on + strand at 485.683 kb on - strand at 485.712 kb on - strand at 485.738 kb on - strand at 485.738 kb on - strand at 485.771 kb on + strand at 485.788 kb on + strand at 485.796 kb on - strand at 485.796 kb on - strand at 485.796 kb on - strand at 485.796 kb on - strand at 485.796 kb on - strand at 485.861 kb on - strand, within BWI76_RS02365 at 485.954 kb on + strand, within BWI76_RS02365 at 485.989 kb on + strand at 486.097 kb on + strand, within BWI76_RS02365 at 486.105 kb on - strand, within BWI76_RS02365 at 486.105 kb on - strand, within BWI76_RS02365 at 486.112 kb on - strand, within BWI76_RS02365 at 486.193 kb on + strand at 486.201 kb on - strand, within BWI76_RS02365 at 486.203 kb on + strand, within BWI76_RS02365 at 486.313 kb on - strand, within BWI76_RS02365 at 486.407 kb on + strand, within BWI76_RS02365 at 486.415 kb on - strand, within BWI76_RS02365 at 486.415 kb on - strand, within BWI76_RS02365 at 486.420 kb on - strand, within BWI76_RS02365 at 486.470 kb on + strand, within BWI76_RS02365 at 486.471 kb on + strand, within BWI76_RS02365 at 486.479 kb on - strand, within BWI76_RS02365 at 486.479 kb on - strand, within BWI76_RS02365 at 486.553 kb on + strand at 486.634 kb on + strand at 486.636 kb on - strand at 486.641 kb on - strand at 486.642 kb on - strand at 486.642 kb on - strand at 486.642 kb on - strand at 486.696 kb on - strand at 486.706 kb on + strand at 486.714 kb on - strand at 486.724 kb on - strand at 486.865 kb on - strand, within BWI76_RS02370 at 487.038 kb on + strand, within BWI76_RS02370 at 487.038 kb on + strand, within BWI76_RS02370 at 487.093 kb on + strand, within BWI76_RS02370 at 487.093 kb on + strand, within BWI76_RS02370 at 487.101 kb on - strand, within BWI76_RS02370 at 487.104 kb on - strand, within BWI76_RS02370 at 487.154 kb on - strand, within BWI76_RS02370 at 487.154 kb on - strand, within BWI76_RS02370 at 487.154 kb on - strand, within BWI76_RS02370 at 487.156 kb on + strand, within BWI76_RS02370 at 487.164 kb on - strand, within BWI76_RS02370 at 487.194 kb on - strand, within BWI76_RS02370 at 487.286 kb on - strand, within BWI76_RS02370 at 487.321 kb on - strand at 487.321 kb on - strand, within BWI76_RS02370 at 487.321 kb on - strand at 487.407 kb on - strand, within BWI76_RS02370 at 487.451 kb on - strand, within BWI76_RS02370 at 487.462 kb on - strand, within BWI76_RS02370 at 487.468 kb on - strand, within BWI76_RS02370 at 487.550 kb on - strand, within BWI76_RS02370 at 487.564 kb on - strand, within BWI76_RS02370 at 487.578 kb on - strand, within BWI76_RS02370
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 485,083 + -2.9 485,174 - -0.8 485,259 - +0.2 485,329 + BWI76_RS02360 0.10 -0.7 485,329 + BWI76_RS02360 0.10 -1.4 485,342 - BWI76_RS02360 0.14 +0.0 485,342 - BWI76_RS02360 0.14 +0.2 485,414 - BWI76_RS02360 0.34 +1.0 485,435 - BWI76_RS02360 0.40 +0.2 485,472 + BWI76_RS02360 0.51 +0.2 485,480 - BWI76_RS02360 0.53 +1.2 485,517 + BWI76_RS02360 0.63 +0.2 485,550 + BWI76_RS02360 0.73 +1.2 485,591 + BWI76_RS02360 0.84 +0.0 485,591 + BWI76_RS02360 0.84 -0.6 485,599 - BWI76_RS02360 0.86 +1.5 485,599 - BWI76_RS02360 0.86 -0.2 485,625 + -2.6 485,626 + +0.3 485,626 + -1.8 485,626 + -0.4 485,626 + +0.2 485,626 + -0.2 485,626 + +1.2 485,626 + -0.2 485,626 + -0.1 485,626 + +0.3 485,634 - +0.8 485,634 - +3.2 485,634 - -1.6 485,634 - -0.6 485,645 + -0.2 485,656 + +0.6 485,656 + +0.0 485,657 + +0.3 485,662 + -0.2 485,662 + -0.1 485,664 - +0.1 485,665 - +0.3 485,669 + -1.8 485,670 - -0.3 485,672 + +0.2 485,680 + +0.0 485,683 - +0.7 485,712 - +0.9 485,738 - -0.2 485,738 - +1.0 485,771 + -1.4 485,788 + -0.8 485,796 - +0.9 485,796 - -1.2 485,796 - -0.1 485,796 - -0.0 485,796 - +0.3 485,861 - BWI76_RS02365 0.15 +2.2 485,954 + BWI76_RS02365 0.26 +0.6 485,989 + +1.2 486,097 + BWI76_RS02365 0.42 -2.4 486,105 - BWI76_RS02365 0.43 -2.0 486,105 - BWI76_RS02365 0.43 -1.8 486,112 - BWI76_RS02365 0.44 -1.2 486,193 + +2.8 486,201 - BWI76_RS02365 0.54 +0.2 486,203 + BWI76_RS02365 0.54 -1.8 486,313 - BWI76_RS02365 0.67 -0.4 486,407 + BWI76_RS02365 0.78 -1.2 486,415 - BWI76_RS02365 0.79 +0.6 486,415 - BWI76_RS02365 0.79 -1.8 486,420 - BWI76_RS02365 0.80 +1.2 486,470 + BWI76_RS02365 0.85 +2.2 486,471 + BWI76_RS02365 0.85 -0.3 486,479 - BWI76_RS02365 0.86 -1.5 486,479 - BWI76_RS02365 0.86 +0.2 486,553 + -0.4 486,634 + -0.4 486,636 - -0.2 486,641 - +0.2 486,642 - -1.6 486,642 - -2.2 486,642 - -0.6 486,696 - +0.7 486,706 + +0.2 486,714 - -1.8 486,724 - +0.8 486,865 - BWI76_RS02370 0.12 +0.2 487,038 + BWI76_RS02370 0.20 -1.6 487,038 + BWI76_RS02370 0.20 -0.6 487,093 + BWI76_RS02370 0.22 +1.2 487,093 + BWI76_RS02370 0.22 -1.4 487,101 - BWI76_RS02370 0.23 +0.2 487,104 - BWI76_RS02370 0.23 +1.2 487,154 - BWI76_RS02370 0.25 +0.5 487,154 - BWI76_RS02370 0.25 -1.2 487,154 - BWI76_RS02370 0.25 +0.2 487,156 + BWI76_RS02370 0.25 +1.3 487,164 - BWI76_RS02370 0.26 -0.4 487,194 - BWI76_RS02370 0.27 -1.8 487,286 - BWI76_RS02370 0.31 -1.7 487,321 - -0.4 487,321 - BWI76_RS02370 0.33 -1.0 487,321 - +1.2 487,407 - BWI76_RS02370 0.37 -1.2 487,451 - BWI76_RS02370 0.39 -1.6 487,462 - BWI76_RS02370 0.40 -0.4 487,468 - BWI76_RS02370 0.40 +0.6 487,550 - BWI76_RS02370 0.44 -1.0 487,564 - BWI76_RS02370 0.44 +0.2 487,578 - BWI76_RS02370 0.45 +1.5
Or see this region's nucleotide sequence