Strain Fitness in Sinorhizobium meliloti 1021 around SMc01508

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01510 and SMc01509 are separated by 206 nucleotidesSMc01509 and SMc01508 are separated by 47 nucleotidesSMc01508 and SMc01507 are separated by 165 nucleotides SMc01510: SMc01510 - hemin importer ATP-binding subunit, at 2,619,659 to 2,620,447 SMc01510 SMc01509: SMc01509 - hypothetical protein, at 2,620,654 to 2,621,016 SMc01509 SMc01508: SMc01508 - hypothetical protein, at 2,621,064 to 2,621,495 SMc01508 SMc01507: SMc01507 - hypothetical protein, at 2,621,661 to 2,623,166 SMc01507 Position (kb) 2621 2622Strain fitness (log2 ratio) -1 0 1at 2620.142 kb on + strand, within SMc01510at 2620.142 kb on + strand, within SMc01510at 2620.142 kb on + strand, within SMc01510at 2620.143 kb on - strand, within SMc01510at 2620.143 kb on - strand, within SMc01510at 2620.143 kb on - strand, within SMc01510at 2620.267 kb on + strand, within SMc01510at 2620.267 kb on + strand, within SMc01510at 2620.267 kb on + strand, within SMc01510at 2620.268 kb on - strand, within SMc01510at 2620.422 kb on + strandat 2620.445 kb on + strandat 2620.445 kb on + strandat 2620.445 kb on + strandat 2620.445 kb on + strandat 2620.446 kb on - strandat 2620.479 kb on - strandat 2620.527 kb on - strandat 2620.742 kb on + strand, within SMc01509at 2620.906 kb on + strand, within SMc01509at 2621.046 kb on - strandat 2621.046 kb on - strandat 2621.058 kb on + strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.064 kb on - strandat 2621.131 kb on - strand, within SMc01508at 2621.133 kb on - strand, within SMc01508at 2621.184 kb on + strand, within SMc01508at 2621.230 kb on - strand, within SMc01508at 2621.494 kb on - strandat 2621.494 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,620,142 + SMc01510 0.61 +0.0
2,620,142 + SMc01510 0.61 +0.1
2,620,142 + SMc01510 0.61 +0.5
2,620,143 - SMc01510 0.61 +0.1
2,620,143 - SMc01510 0.61 +0.6
2,620,143 - SMc01510 0.61 +0.2
2,620,267 + SMc01510 0.77 -0.5
2,620,267 + SMc01510 0.77 -0.1
2,620,267 + SMc01510 0.77 +0.2
2,620,268 - SMc01510 0.77 +0.2
2,620,422 + -0.4
2,620,445 + -0.1
2,620,445 + +0.2
2,620,445 + -0.4
2,620,445 + -0.8
2,620,446 - +0.3
2,620,479 - -0.1
2,620,527 - +0.5
2,620,742 + SMc01509 0.24 -1.7
2,620,906 + SMc01509 0.69 -0.9
2,621,046 - +0.0
2,621,046 - -0.3
2,621,058 + -0.0
2,621,059 - +0.1
2,621,059 - +0.4
2,621,059 - -0.0
2,621,059 - -0.1
2,621,059 - +0.2
2,621,064 - -0.3
2,621,131 - SMc01508 0.16 +1.6
2,621,133 - SMc01508 0.16 -0.3
2,621,184 + SMc01508 0.28 +0.6
2,621,230 - SMc01508 0.38 -0.5
2,621,494 - -0.1
2,621,494 - +0.4

Or see this region's nucleotide sequence