Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21323 and SM_b21324 are separated by 22 nucleotides SM_b21324 and SM_b21325 overlap by 8 nucleotides SM_b21325 and SM_b21326 are separated by 11 nucleotides
SM_b21323: SM_b21323 - hypothetical protein, at 992,615 to 993,787
_b21323
SM_b21324: SM_b21324 - glucose-1-phosphate thymidylyltransferase, at 993,810 to 994,691
_b21324
SM_b21325: SM_b21325 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 994,684 to 995,247
_b21325
SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329
_b21326
Position (kb) 994
995
996 Strain fitness (log2 ratio) -2
-1
0
1
2 at 993.701 kb on + strand at 993.701 kb on + strand at 993.702 kb on - strand at 993.702 kb on - strand at 993.702 kb on - strand at 993.702 kb on - strand at 993.913 kb on - strand, within SM_b21324 at 993.913 kb on - strand, within SM_b21324 at 993.915 kb on + strand, within SM_b21324 at 993.945 kb on - strand, within SM_b21324 at 994.038 kb on + strand, within SM_b21324 at 994.039 kb on - strand, within SM_b21324 at 994.422 kb on + strand, within SM_b21324 at 994.423 kb on - strand, within SM_b21324 at 994.423 kb on - strand, within SM_b21324 at 994.467 kb on + strand, within SM_b21324 at 994.482 kb on - strand, within SM_b21324 at 994.579 kb on + strand, within SM_b21324 at 994.580 kb on - strand, within SM_b21324 at 994.644 kb on + strand at 994.645 kb on - strand at 994.653 kb on + strand at 994.774 kb on + strand, within SM_b21325 at 994.775 kb on - strand, within SM_b21325 at 994.837 kb on + strand, within SM_b21325 at 994.873 kb on + strand, within SM_b21325 at 994.874 kb on - strand, within SM_b21325 at 994.874 kb on - strand, within SM_b21325 at 995.080 kb on + strand, within SM_b21325 at 995.088 kb on - strand, within SM_b21325 at 995.098 kb on + strand, within SM_b21325 at 995.150 kb on + strand, within SM_b21325 at 995.150 kb on + strand, within SM_b21325 at 995.151 kb on - strand, within SM_b21325 at 995.364 kb on + strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.412 kb on + strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.546 kb on + strand, within SM_b21326 at 995.716 kb on - strand, within SM_b21326 at 995.744 kb on + strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.788 kb on + strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.827 kb on - strand, within SM_b21326 at 995.881 kb on + strand, within SM_b21326 at 995.882 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.184 kb on + strand, within SM_b21326
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 993,701 + -0.8 993,701 + +0.1 993,702 - +0.2 993,702 - +0.1 993,702 - +0.2 993,702 - +0.2 993,913 - SM_b21324 0.12 -0.1 993,913 - SM_b21324 0.12 +1.0 993,915 + SM_b21324 0.12 -0.5 993,945 - SM_b21324 0.15 -0.3 994,038 + SM_b21324 0.26 +0.7 994,039 - SM_b21324 0.26 -1.8 994,422 + SM_b21324 0.69 -0.5 994,423 - SM_b21324 0.70 +0.3 994,423 - SM_b21324 0.70 -0.1 994,467 + SM_b21324 0.74 -0.2 994,482 - SM_b21324 0.76 +2.1 994,579 + SM_b21324 0.87 +0.2 994,580 - SM_b21324 0.87 -0.1 994,644 + +0.2 994,645 - +0.0 994,653 + -0.2 994,774 + SM_b21325 0.16 -0.7 994,775 - SM_b21325 0.16 -0.0 994,837 + SM_b21325 0.27 -0.1 994,873 + SM_b21325 0.34 -0.1 994,874 - SM_b21325 0.34 +0.4 994,874 - SM_b21325 0.34 -0.6 995,080 + SM_b21325 0.70 -0.1 995,088 - SM_b21325 0.72 -2.2 995,098 + SM_b21325 0.73 -0.1 995,150 + SM_b21325 0.83 -0.6 995,150 + SM_b21325 0.83 -0.6 995,151 - SM_b21325 0.83 -0.7 995,364 + -0.5 995,365 - -0.1 995,365 - -1.0 995,365 - -0.4 995,412 + SM_b21326 0.14 -1.1 995,413 - SM_b21326 0.14 -0.0 995,413 - SM_b21326 0.14 +0.1 995,413 - SM_b21326 0.14 +2.0 995,546 + SM_b21326 0.27 +0.9 995,716 - SM_b21326 0.43 -0.8 995,744 + SM_b21326 0.45 -1.1 995,779 - SM_b21326 0.49 +0.0 995,779 - SM_b21326 0.49 -0.3 995,787 + SM_b21326 0.49 -0.3 995,787 + SM_b21326 0.49 -0.2 995,787 + SM_b21326 0.49 +0.6 995,787 + SM_b21326 0.49 +0.1 995,787 + SM_b21326 0.49 +0.1 995,788 + SM_b21326 0.49 +0.2 995,788 - SM_b21326 0.49 -0.1 995,788 - SM_b21326 0.49 -1.4 995,788 - SM_b21326 0.49 +1.2 995,788 - SM_b21326 0.49 +1.2 995,788 - SM_b21326 0.49 -0.1 995,788 - SM_b21326 0.49 +0.6 995,827 - SM_b21326 0.53 +0.1 995,881 + SM_b21326 0.58 +1.0 995,882 - SM_b21326 0.58 +0.3 995,905 - SM_b21326 0.60 -0.7 995,905 - SM_b21326 0.60 -0.7 996,001 - SM_b21326 0.69 -0.2 996,001 - SM_b21326 0.69 -0.1 996,001 - SM_b21326 0.69 -0.5 996,184 + SM_b21326 0.86 +1.0
Or see this region's nucleotide sequence