Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS03235

Experiment: Glucose (C) and Betaine (N); with MOPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03230 and PFLU_RS03235 are separated by 145 nucleotidesPFLU_RS03235 and PFLU_RS03240 overlap by 4 nucleotides PFLU_RS03230: PFLU_RS03230 - serine protein kinase RIO, at 747,129 to 748,028 _RS03230 PFLU_RS03235: PFLU_RS03235 - Cu(I)-responsive transcriptional regulator, at 748,174 to 748,575 _RS03235 PFLU_RS03240: PFLU_RS03240 - copper-translocating P-type ATPase, at 748,572 to 750,773 _RS03240 Position (kb) 748 749Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 747.206 kb on + strandat 747.206 kb on + strandat 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.222 kb on + strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.223 kb on - strand, within PFLU_RS03230at 747.264 kb on + strand, within PFLU_RS03230at 747.264 kb on + strand, within PFLU_RS03230at 747.264 kb on + strand, within PFLU_RS03230at 747.265 kb on - strand, within PFLU_RS03230at 747.265 kb on - strand, within PFLU_RS03230at 747.321 kb on - strand, within PFLU_RS03230at 747.329 kb on + strand, within PFLU_RS03230at 747.510 kb on + strand, within PFLU_RS03230at 747.511 kb on - strand, within PFLU_RS03230at 747.511 kb on - strand, within PFLU_RS03230at 747.570 kb on + strand, within PFLU_RS03230at 747.570 kb on + strand, within PFLU_RS03230at 747.571 kb on - strand, within PFLU_RS03230at 747.571 kb on - strand, within PFLU_RS03230at 747.611 kb on + strand, within PFLU_RS03230at 747.611 kb on + strand, within PFLU_RS03230at 747.656 kb on + strand, within PFLU_RS03230at 747.657 kb on - strand, within PFLU_RS03230at 747.657 kb on - strand, within PFLU_RS03230at 747.762 kb on + strand, within PFLU_RS03230at 747.762 kb on + strand, within PFLU_RS03230at 747.762 kb on + strand, within PFLU_RS03230at 747.762 kb on + strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.801 kb on + strand, within PFLU_RS03230at 747.801 kb on + strand, within PFLU_RS03230at 747.802 kb on - strand, within PFLU_RS03230at 747.802 kb on - strand, within PFLU_RS03230at 747.802 kb on - strand, within PFLU_RS03230at 747.802 kb on - strand, within PFLU_RS03230at 747.802 kb on - strand, within PFLU_RS03230at 747.825 kb on + strand, within PFLU_RS03230at 747.826 kb on - strand, within PFLU_RS03230at 747.826 kb on - strand, within PFLU_RS03230at 748.037 kb on + strandat 748.037 kb on + strandat 748.037 kb on + strandat 748.037 kb on + strandat 748.037 kb on + strandat 748.038 kb on - strandat 748.038 kb on - strandat 748.038 kb on - strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.166 kb on - strandat 748.166 kb on - strandat 748.166 kb on - strandat 748.314 kb on + strand, within PFLU_RS03235at 748.314 kb on + strand, within PFLU_RS03235at 748.314 kb on + strand, within PFLU_RS03235at 748.314 kb on + strand, within PFLU_RS03235at 748.314 kb on + strand, within PFLU_RS03235at 748.315 kb on - strand, within PFLU_RS03235at 748.315 kb on - strand, within PFLU_RS03235at 748.315 kb on - strand, within PFLU_RS03235at 748.315 kb on - strand, within PFLU_RS03235at 748.429 kb on - strand, within PFLU_RS03235at 748.461 kb on - strand, within PFLU_RS03235at 748.517 kb on + strand, within PFLU_RS03235at 748.517 kb on + strand, within PFLU_RS03235at 748.517 kb on + strand, within PFLU_RS03235at 748.517 kb on + strand, within PFLU_RS03235at 748.518 kb on - strand, within PFLU_RS03235at 748.518 kb on - strand, within PFLU_RS03235at 748.518 kb on - strand, within PFLU_RS03235at 748.518 kb on - strand, within PFLU_RS03235at 748.598 kb on + strandat 748.620 kb on + strandat 748.620 kb on + strandat 748.620 kb on + strandat 748.620 kb on + strandat 748.621 kb on - strandat 748.621 kb on - strandat 748.621 kb on - strandat 748.721 kb on + strandat 748.721 kb on + strandat 748.722 kb on - strandat 748.722 kb on - strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.762 kb on + strandat 748.763 kb on - strandat 748.763 kb on - strandat 748.763 kb on - strandat 749.442 kb on + strand, within PFLU_RS03240at 749.442 kb on + strand, within PFLU_RS03240at 749.442 kb on + strand, within PFLU_RS03240at 749.443 kb on - strand, within PFLU_RS03240at 749.483 kb on + strand, within PFLU_RS03240at 749.484 kb on - strand, within PFLU_RS03240at 749.484 kb on - strand, within PFLU_RS03240at 749.484 kb on - strand, within PFLU_RS03240at 749.484 kb on - strand, within PFLU_RS03240

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and Betaine (N); with MOPS; with chloride
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747,206 + -1.2
747,206 + +1.3
747,222 + PFLU_RS03230 0.10 -0.9
747,222 + PFLU_RS03230 0.10 +0.6
747,222 + PFLU_RS03230 0.10 -0.5
747,222 + PFLU_RS03230 0.10 +0.6
747,222 + PFLU_RS03230 0.10 -1.7
747,222 + PFLU_RS03230 0.10 -0.6
747,222 + PFLU_RS03230 0.10 -0.5
747,222 + PFLU_RS03230 0.10 +0.2
747,222 + PFLU_RS03230 0.10 -0.5
747,222 + PFLU_RS03230 0.10 -2.1
747,222 + PFLU_RS03230 0.10 -0.4
747,223 - PFLU_RS03230 0.10 -0.1
747,223 - PFLU_RS03230 0.10 +0.0
747,223 - PFLU_RS03230 0.10 +0.7
747,223 - PFLU_RS03230 0.10 +0.8
747,223 - PFLU_RS03230 0.10 -1.0
747,223 - PFLU_RS03230 0.10 -0.3
747,223 - PFLU_RS03230 0.10 -1.4
747,223 - PFLU_RS03230 0.10 -1.1
747,264 + PFLU_RS03230 0.15 -0.0
747,264 + PFLU_RS03230 0.15 -0.6
747,264 + PFLU_RS03230 0.15 -1.4
747,265 - PFLU_RS03230 0.15 +1.3
747,265 - PFLU_RS03230 0.15 -1.1
747,321 - PFLU_RS03230 0.21 +1.5
747,329 + PFLU_RS03230 0.22 +1.1
747,510 + PFLU_RS03230 0.42 +0.8
747,511 - PFLU_RS03230 0.42 +0.6
747,511 - PFLU_RS03230 0.42 -0.9
747,570 + PFLU_RS03230 0.49 -2.9
747,570 + PFLU_RS03230 0.49 -0.5
747,571 - PFLU_RS03230 0.49 +0.9
747,571 - PFLU_RS03230 0.49 -1.5
747,611 + PFLU_RS03230 0.54 -1.1
747,611 + PFLU_RS03230 0.54 -0.9
747,656 + PFLU_RS03230 0.59 -2.8
747,657 - PFLU_RS03230 0.59 +0.2
747,657 - PFLU_RS03230 0.59 +0.5
747,762 + PFLU_RS03230 0.70 +0.1
747,762 + PFLU_RS03230 0.70 -1.8
747,762 + PFLU_RS03230 0.70 +0.4
747,762 + PFLU_RS03230 0.70 -1.7
747,763 - PFLU_RS03230 0.70 +0.5
747,763 - PFLU_RS03230 0.70 -0.1
747,763 - PFLU_RS03230 0.70 -1.0
747,763 - PFLU_RS03230 0.70 -1.5
747,763 - PFLU_RS03230 0.70 +0.3
747,763 - PFLU_RS03230 0.70 -0.5
747,763 - PFLU_RS03230 0.70 -1.9
747,801 + PFLU_RS03230 0.75 +0.0
747,801 + PFLU_RS03230 0.75 -0.8
747,802 - PFLU_RS03230 0.75 -0.6
747,802 - PFLU_RS03230 0.75 -0.1
747,802 - PFLU_RS03230 0.75 -0.6
747,802 - PFLU_RS03230 0.75 +0.1
747,802 - PFLU_RS03230 0.75 -0.2
747,825 + PFLU_RS03230 0.77 +0.6
747,826 - PFLU_RS03230 0.77 -1.3
747,826 - PFLU_RS03230 0.77 -0.1
748,037 + -1.1
748,037 + -1.6
748,037 + +2.7
748,037 + -2.0
748,037 + -0.8
748,038 - +0.2
748,038 - -0.1
748,038 - +0.9
748,165 + -1.6
748,165 + -2.1
748,165 + -0.6
748,165 + +0.2
748,165 + +1.2
748,165 + +0.1
748,165 + -0.1
748,166 - +0.6
748,166 - -0.4
748,166 - -0.3
748,314 + PFLU_RS03235 0.35 -1.4
748,314 + PFLU_RS03235 0.35 +0.3
748,314 + PFLU_RS03235 0.35 +0.4
748,314 + PFLU_RS03235 0.35 -0.6
748,314 + PFLU_RS03235 0.35 +1.0
748,315 - PFLU_RS03235 0.35 +0.1
748,315 - PFLU_RS03235 0.35 -1.7
748,315 - PFLU_RS03235 0.35 -0.9
748,315 - PFLU_RS03235 0.35 -1.8
748,429 - PFLU_RS03235 0.63 -0.2
748,461 - PFLU_RS03235 0.71 -0.8
748,517 + PFLU_RS03235 0.85 -1.5
748,517 + PFLU_RS03235 0.85 -1.8
748,517 + PFLU_RS03235 0.85 -0.2
748,517 + PFLU_RS03235 0.85 -1.7
748,518 - PFLU_RS03235 0.86 -0.6
748,518 - PFLU_RS03235 0.86 -0.8
748,518 - PFLU_RS03235 0.86 +0.2
748,518 - PFLU_RS03235 0.86 -0.1
748,598 + +0.7
748,620 + -1.3
748,620 + -0.9
748,620 + -0.1
748,620 + +0.0
748,621 - -1.5
748,621 - -2.3
748,621 - -0.8
748,721 + -1.8
748,721 + -2.8
748,722 - -3.2
748,722 - -2.9
748,723 + -2.0
748,723 + -1.7
748,723 + -1.2
748,723 + -1.7
748,723 + -2.3
748,723 + -3.0
748,723 + -1.5
748,723 + -1.7
748,723 + -2.5
748,723 + -1.8
748,723 + -1.5
748,723 + -2.1
748,723 + -3.8
748,723 + -2.1
748,723 + -4.6
748,724 - -2.8
748,724 - -3.9
748,724 - -0.8
748,724 - -0.7
748,724 - -3.0
748,724 - -3.2
748,724 - -1.7
748,724 - -2.6
748,724 - -0.9
748,724 - -4.1
748,724 - -2.5
748,724 - -1.7
748,724 - -1.1
748,724 - -0.1
748,724 - -1.8
748,724 - -2.5
748,724 - -1.3
748,724 - -2.8
748,724 - -1.4
748,762 + -3.4
748,763 - -1.9
748,763 - -2.4
748,763 - -3.0
749,442 + PFLU_RS03240 0.40 +0.9
749,442 + PFLU_RS03240 0.40 +1.4
749,442 + PFLU_RS03240 0.40 -0.5
749,443 - PFLU_RS03240 0.40 -0.5
749,483 + PFLU_RS03240 0.41 -2.7
749,484 - PFLU_RS03240 0.41 -3.7
749,484 - PFLU_RS03240 0.41 -0.1
749,484 - PFLU_RS03240 0.41 -1.4
749,484 - PFLU_RS03240 0.41 +0.1

Or see this region's nucleotide sequence