Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11200 and BWI76_RS11205 are separated by 167 nucleotides BWI76_RS11205 and BWI76_RS11210 are separated by 296 nucleotides
BWI76_RS11200: BWI76_RS11200 - transpeptidase, at 2,360,690 to 2,361,649
_RS11200
BWI76_RS11205: BWI76_RS11205 - transcription-repair coupling factor, at 2,361,817 to 2,365,263
_RS11205
BWI76_RS11210: BWI76_RS11210 - outer membrane-specific lipoprotein transporter subunit LolC, at 2,365,560 to 2,366,768
_RS11210
Position (kb)
2361
2362
2363
2364
2365
2366 Strain fitness (log2 ratio)
-2
-1
0
1 at 2361.103 kb on - strand, within BWI76_RS11200 at 2361.289 kb on + strand, within BWI76_RS11200 at 2361.427 kb on + strand, within BWI76_RS11200 at 2361.446 kb on - strand, within BWI76_RS11200 at 2361.446 kb on - strand, within BWI76_RS11200 at 2362.876 kb on - strand at 2363.114 kb on - strand, within BWI76_RS11205 at 2363.127 kb on + strand, within BWI76_RS11205 at 2363.127 kb on + strand, within BWI76_RS11205 at 2363.172 kb on + strand, within BWI76_RS11205 at 2363.965 kb on + strand, within BWI76_RS11205 at 2364.250 kb on - strand, within BWI76_RS11205 at 2364.730 kb on - strand, within BWI76_RS11205
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,361,103 - BWI76_RS11200 0.43 -0.8 2,361,289 + BWI76_RS11200 0.62 -0.9 2,361,427 + BWI76_RS11200 0.77 +1.2 2,361,446 - BWI76_RS11200 0.79 -1.3 2,361,446 - BWI76_RS11200 0.79 -1.4 2,362,876 - +0.7 2,363,114 - BWI76_RS11205 0.38 -0.6 2,363,127 + BWI76_RS11205 0.38 -1.9 2,363,127 + BWI76_RS11205 0.38 -1.3 2,363,172 + BWI76_RS11205 0.39 +0.7 2,363,965 + BWI76_RS11205 0.62 -1.1 2,364,250 - BWI76_RS11205 0.71 -1.5 2,364,730 - BWI76_RS11205 0.85 -1.0
Or see this region's nucleotide sequence